Detailed information NTG0530894

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DRO_RS10375
• Genome accession: NZ_CP068791
• Coordinates: 2077169..2078335 (+)
• Length: 388 a.a.
• NCBI ID: WP_010888696.1
• Uniprot ID: Q9RSQ9
• Organism: Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain R1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2072169..2083335

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DRO_RS10355 (DRO_2034)	-	2072382..2072672 (+)	291	WP_027479958.1	hypothetical protein	-
DRO_RS10360 (DRO_2035)	-	2072748..2073185 (+)	438	WP_034350316.1	hypothetical protein	-
DRO_RS10365 (DRO_2036)	-	2073191..2074201 (-)	1011	WP_010888693.1	WD40 repeat domain-containing protein	-
DRO_RS10370 (DRO_2037)	pnp	2074293..2076632 (+)	2340	WP_027479957.1	polyribonucleotide nucleotidyltransferase	-
DRO_RS10375 (DRO_2038)	pilD	2077169..2078335 (+)	1167	WP_010888696.1	prepilin peptidase	Machinery gene
DRO_RS10380 (DRO_2039)	-	2078536..2078994 (-)	459	WP_010888697.1	divergent PAP2 family protein	-
DRO_RS10385 (DRO_2040)	nusB	2079018..2079596 (-)	579	WP_010888698.1	transcription antitermination factor NusB	-
DRO_RS10390 (DRO_2041)	-	2079593..2080000 (-)	408	WP_010888699.1	Asp23/Gls24 family envelope stress response protein	-
DRO_RS10395 (DRO_2042)	ligA	2080071..2082155 (-)	2085	WP_051618817.1	NAD-dependent DNA ligase LigA	-

Sequence

Protein

• Length: 388 a.a.
• Molecular weight: 41204.65 Da
• Isoelectric Point: 5.8430

>NTDB_id=530894 DRO_RS10375 WP_010888696.1 2077169..2078335(+) (pilD) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain R1]
MNVDTLIVLFAGLLGLLVGSFSNVLIWRLPRGENIAFPPSHCPKCDHPLKPTDLVPVFSWLALGGRCRYCRAPINPRYPV
VELLTGVAYAVIAATFPLSTYEAGTLGLMVLFTILLVGSAIDLDTMTLPDELTLPGTLLGVLFGLAGAGLYAQEGQLGLP
NVAQAVEGALMGAGVIVLISVYGSWVLRRFRERQWPEAPIGYQQISLGLLAGAWLGPWWGLGVALLSAAVNVAAKKAVRI
PELLTLGGFLVSLALSSAGTGPGLLDMLRGGLMAAGAVSLVCGVYWWIYWRRNKQAEDDGTDDEQSDPVAMGFGDVKLAA
VIGAFLGWERLLLAVVVAIFAGAVLGLVQLALKQENRVKFGPYLALGAVVALLWGGPLLDWYRGLLGM

Nucleotide

• Length: 1167 bp

>NTDB_id=530894 DRO_RS10375 WP_010888696.1 2077169..2078335(+) (pilD) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain R1]
GTGAACGTCGACACCCTCATCGTCCTCTTCGCCGGGCTGCTGGGCCTGCTGGTGGGGTCTTTTTCCAATGTGCTGATCTG
GCGCCTGCCGAGAGGCGAAAACATCGCTTTTCCGCCGAGCCACTGCCCCAAGTGCGACCATCCGCTCAAGCCCACCGACC
TCGTGCCGGTCTTTTCCTGGCTGGCGCTGGGAGGCCGCTGCCGCTACTGCCGCGCACCCATTAACCCGCGCTATCCGGTG
GTGGAACTGCTCACGGGCGTCGCCTACGCCGTCATTGCCGCGACGTTTCCGCTGAGCACCTACGAGGCGGGCACGCTGGG
ACTGATGGTGCTGTTCACGATTTTGCTCGTCGGCAGCGCGATTGACCTCGACACCATGACTCTCCCTGACGAGCTGACGC
TGCCCGGCACCCTGCTCGGCGTGCTGTTCGGGCTCGCGGGCGCGGGGCTCTACGCGCAGGAGGGTCAGTTGGGCCTGCCC
AACGTCGCGCAGGCGGTGGAAGGCGCGCTGATGGGCGCGGGCGTCATCGTCTTGATCAGCGTGTACGGCTCGTGGGTGCT
GCGGCGCTTCCGCGAACGGCAGTGGCCTGAAGCGCCCATCGGTTACCAGCAAATCAGCCTGGGGCTGCTGGCAGGCGCGT
GGCTGGGGCCGTGGTGGGGCCTGGGCGTCGCGCTGCTCTCGGCGGCGGTCAACGTGGCGGCGAAAAAGGCCGTGCGGATT
CCTGAACTGCTCACGCTGGGCGGCTTTCTGGTCAGCCTCGCCCTGAGCAGCGCGGGCACAGGGCCGGGCCTGCTCGACAT
GCTGCGCGGCGGCCTGATGGCGGCGGGCGCCGTCTCGCTCGTCTGCGGCGTGTACTGGTGGATCTACTGGCGGCGCAACA
AGCAGGCTGAAGACGACGGCACCGACGACGAGCAGAGTGACCCGGTGGCGATGGGCTTCGGGGACGTGAAGCTCGCCGCT
GTGATTGGCGCCTTTCTGGGCTGGGAGCGGCTGCTGCTTGCCGTGGTGGTGGCAATTTTTGCGGGCGCCGTGCTGGGGCT
GGTGCAACTCGCGCTCAAGCAGGAAAACCGGGTCAAGTTCGGCCCTTACCTCGCCCTGGGGGCCGTCGTCGCGCTGCTGT
GGGGCGGGCCGCTGCTGGACTGGTACCGGGGGCTGCTAGGGATGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (109-229)

• Type IV leader peptidase family (Peptidase_A24) (238-347)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (13-96)

3D structure

• AlphaFold DB: Q9RSQ9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	100	100	1