Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   K8351_RS08935 Genome accession   NZ_CP082947
Coordinates   1682258..1682638 (-) Length   126 a.a.
NCBI ID   WP_002776373.1    Uniprot ID   A0ABN0ERI9
Organism   Campylobacter coli strain C203016     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1677258..1687638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8351_RS08910 (K8351_08885) aspS 1677771..1679522 (+) 1752 WP_002784258.1 aspartate--tRNA ligase -
  K8351_RS08915 (K8351_08890) - 1679519..1680094 (+) 576 WP_002776379.1 adenylate kinase -
  K8351_RS08920 (K8351_08895) ppa 1680104..1680622 (+) 519 WP_002776378.1 inorganic diphosphatase -
  K8351_RS08925 (K8351_08900) msrA 1680670..1681170 (+) 501 WP_002776375.1 peptide-methionine (S)-S-oxide reductase MsrA -
  K8351_RS08930 (K8351_08905) - 1681393..1682247 (-) 855 WP_370300696.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  K8351_RS08935 (K8351_08910) dprB 1682258..1682638 (-) 381 WP_002776373.1 Holliday junction resolvase RuvX Machinery gene
  K8351_RS08940 (K8351_08915) dprA 1682635..1683405 (-) 771 WP_002776372.1 DNA-processing protein DprA Machinery gene
  K8351_RS08945 (K8351_08920) - 1683395..1684447 (-) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  K8351_RS08950 (K8351_08925) ilvC 1684450..1685472 (-) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  K8351_RS08955 (K8351_08930) - 1685595..1687529 (+) 1935 WP_052777446.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13949.38 Da        Isoelectric Point: 9.5520

>NTDB_id=530876 K8351_RS08935 WP_002776373.1 1682258..1682638(-) (dprB) [Campylobacter coli strain C203016]
MRALALDVGLKRIGVALCIDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDAKLDSLAALIMIKDYFGI

Nucleotide


Download         Length: 381 bp        

>NTDB_id=530876 K8351_RS08935 WP_002776373.1 1682258..1682638(-) (dprB) [Campylobacter coli strain C203016]
ATGAGAGCTTTGGCCTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATAGATAAAATCGCCATTCCTTTAGA
AGGTATAATCAGAAAAAACCGCAACCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCTAAGGGAGGATCGAGCGAAGAAGAAATGACAAGGCGTATCAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCTAATACACGCAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

42.063

100

0.421