Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   JM957_RS19035 Genome accession   NZ_CP068724
Coordinates   3741358..3742137 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus cereus strain AFA01     
Function   repression of comK (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3716065..3777824 3741358..3742137 within 0


Gene organization within MGE regions


Location: 3716065..3777824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM957_RS18925 - 3716635..3717534 (-) 900 WP_000868217.1 polysaccharide deacetylase family protein -
  JM957_RS18930 pnp 3717686..3719824 (-) 2139 WP_000076737.1 polyribonucleotide nucleotidyltransferase -
  JM957_RS18935 rpsO 3719985..3720254 (-) 270 WP_001229392.1 30S ribosomal protein S15 -
  JM957_RS18940 ribF 3720355..3721326 (-) 972 WP_000766706.1 bifunctional riboflavin kinase/FAD synthetase -
  JM957_RS18945 truB 3721370..3722293 (-) 924 WP_000399352.1 tRNA pseudouridine(55) synthase TruB -
  JM957_RS18950 rbfA 3722380..3722736 (-) 357 WP_000776437.1 30S ribosome-binding factor RbfA -
  JM957_RS18955 - 3722752..3723033 (-) 282 WP_000582363.1 DUF503 family protein -
  JM957_RS18960 infB 3723030..3725090 (-) 2061 WP_065382194.1 translation initiation factor IF-2 -
  JM957_RS18965 - 3725095..3725406 (-) 312 WP_001286523.1 YlxQ family RNA-binding protein -
  JM957_RS18970 - 3725407..3725679 (-) 273 WP_000071127.1 YlxR family protein -
  JM957_RS18975 nusA 3725691..3726797 (-) 1107 WP_000102604.1 transcription termination factor NusA -
  JM957_RS18980 rimP 3726815..3727285 (-) 471 WP_000359096.1 ribosome maturation factor RimP -
  JM957_RS18985 - 3727622..3731923 (-) 4302 WP_000060005.1 PolC-type DNA polymerase III -
  JM957_RS18990 - 3732048..3733748 (-) 1701 WP_000814299.1 proline--tRNA ligase -
  JM957_RS18995 rseP 3733858..3735114 (-) 1257 WP_001090244.1 RIP metalloprotease RseP -
  JM957_RS19000 dxr 3735132..3736274 (-) 1143 WP_000790373.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  JM957_RS19005 cdsA 3736298..3737089 (-) 792 WP_000813592.1 phosphatidate cytidylyltransferase -
  JM957_RS19010 uppS 3737107..3737883 (-) 777 WP_000971296.1 isoprenyl transferase -
  JM957_RS19015 frr 3737969..3738526 (-) 558 WP_000531501.1 ribosome recycling factor -
  JM957_RS19020 pyrH 3738529..3739251 (-) 723 WP_000042668.1 UMP kinase -
  JM957_RS19025 tsf 3739318..3740205 (-) 888 WP_001018578.1 translation elongation factor Ts -
  JM957_RS19030 rpsB 3740309..3741010 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  JM957_RS19035 codY 3741358..3742137 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  JM957_RS19040 hslU 3742215..3743606 (-) 1392 WP_000550078.1 ATP-dependent protease ATPase subunit HslU -
  JM957_RS19045 hslV 3743629..3744171 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  JM957_RS19050 xerC 3744214..3745113 (-) 900 WP_001101243.1 tyrosine recombinase XerC -
  JM957_RS19055 trmFO 3745179..3746483 (-) 1305 WP_000213002.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  JM957_RS19060 topA 3746532..3748610 (-) 2079 WP_001286963.1 type I DNA topoisomerase -
  JM957_RS19065 dprA 3748755..3749624 (-) 870 WP_000818059.1 DNA-processing protein DprA -
  JM957_RS19070 sucD 3749713..3750615 (-) 903 WP_000115178.1 succinate--CoA ligase subunit alpha -
  JM957_RS19075 sucC 3750635..3751795 (-) 1161 WP_001020791.1 ADP-forming succinate--CoA ligase subunit beta -
  JM957_RS19080 - 3751990..3752763 (-) 774 WP_001194265.1 ribonuclease HII -
  JM957_RS19085 ylqF 3752820..3753710 (-) 891 WP_000236704.1 ribosome biogenesis GTPase YlqF -
  JM957_RS19090 lepB 3753731..3754282 (-) 552 WP_000711853.1 signal peptidase I -
  JM957_RS19095 rplS 3754384..3754728 (-) 345 WP_001186516.1 50S ribosomal protein L19 -
  JM957_RS19100 trmD 3754875..3755609 (-) 735 WP_000686903.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  JM957_RS19105 rimM 3755609..3756124 (-) 516 WP_000170278.1 ribosome maturation factor RimM -
  JM957_RS19110 - 3756246..3756473 (-) 228 WP_000737401.1 KH domain-containing protein -
  JM957_RS19115 rpsP 3756488..3756760 (-) 273 WP_000268750.1 30S ribosomal protein S16 -
  JM957_RS19120 ffh 3756862..3758211 (-) 1350 WP_000863460.1 signal recognition particle protein -
  JM957_RS19125 - 3758224..3758556 (-) 333 WP_000891062.1 putative DNA-binding protein -
  JM957_RS19130 ftsY 3758690..3759679 (-) 990 WP_000007655.1 signal recognition particle-docking protein FtsY -
  JM957_RS19135 smc 3759695..3763264 (-) 3570 WP_000478978.1 chromosome segregation protein SMC -
  JM957_RS19140 rncS 3763411..3764148 (-) 738 WP_001146875.1 ribonuclease III -
  JM957_RS19145 acpP 3764207..3764440 (-) 234 WP_000786062.1 acyl carrier protein -
  JM957_RS19150 fabG 3764510..3765250 (-) 741 WP_000911773.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  JM957_RS19155 fabD 3765250..3766194 (-) 945 WP_000515899.1 ACP S-malonyltransferase -
  JM957_RS19160 plsX 3766209..3767201 (-) 993 WP_000684100.1 phosphate acyltransferase PlsX -
  JM957_RS19165 fapR 3767198..3767791 (-) 594 WP_000747348.1 transcription factor FapR -
  JM957_RS19170 recG 3767880..3769928 (-) 2049 WP_065212076.1 ATP-dependent DNA helicase RecG -
  JM957_RS19175 - 3770219..3771895 (-) 1677 WP_000027129.1 DAK2 domain-containing protein -
  JM957_RS19180 - 3771918..3772280 (-) 363 WP_000021109.1 Asp23/Gls24 family envelope stress response protein -
  JM957_RS19185 rpmB 3772657..3772845 (+) 189 WP_000124776.1 50S ribosomal protein L28 -
  JM957_RS19190 spoVM 3772919..3772999 (-) 81 WP_001213599.1 stage V sporulation protein SpoVM -
  JM957_RS19195 - 3773066..3773746 (-) 681 WP_000752665.1 thiamine diphosphokinase -
  JM957_RS19200 rpe 3773816..3774460 (-) 645 WP_065212077.1 ribulose-phosphate 3-epimerase -
  JM957_RS19205 rsgA 3774463..3775344 (-) 882 WP_065212078.1 ribosome small subunit-dependent GTPase A -
  JM957_RS19210 pknB 3775591..3777564 (-) 1974 WP_000904747.1 Stk1 family PASTA domain-containing Ser/Thr kinase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=530751 JM957_RS19035 WP_000421290.1 3741358..3742137(-) (codY) [Bacillus cereus strain AFA01]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=530751 JM957_RS19035 WP_000421290.1 3741358..3742137(-) (codY) [Bacillus cereus strain AFA01]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCGCGTAGTAAAGCTGTTGTTCAAATGGCAATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GCTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAAGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459