Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   JMB28_RS06620 Genome accession   NZ_CP068712
Coordinates   1384598..1386985 (+) Length   795 a.a.
NCBI ID   WP_039068295.1    Uniprot ID   -
Organism   Staphylococcus shinii strain 14AME19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1379598..1391985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMB28_RS06600 (JMB28_06600) sal 1379844..1381475 (+) 1632 WP_081324981.1 Sal family ABC-F type ribosomal protection protein -
  JMB28_RS06605 (JMB28_06605) - 1381536..1382681 (+) 1146 WP_069792182.1 cysteine desulfurase family protein -
  JMB28_RS06610 (JMB28_06610) mnmA 1382682..1383794 (+) 1113 WP_069792181.1 tRNA 2-thiouridine(34) synthase MnmA -
  JMB28_RS06615 (JMB28_06615) - 1383929..1384594 (+) 666 WP_069792180.1 tetratricopeptide repeat protein -
  JMB28_RS06620 (JMB28_06620) recD2 1384598..1386985 (+) 2388 WP_039068295.1 ATP-dependent RecD-like DNA helicase Machinery gene
  JMB28_RS06625 (JMB28_06625) alaS 1387334..1389964 (+) 2631 WP_069792179.1 alanine--tRNA ligase -
  JMB28_RS06630 (JMB28_06630) - 1390033..1390293 (+) 261 WP_029377131.1 IreB family regulatory phosphoprotein -
  JMB28_RS06635 (JMB28_06635) ruvX 1390297..1390725 (+) 429 WP_039068293.1 Holliday junction resolvase RuvX -
  JMB28_RS06640 (JMB28_06640) - 1390742..1391068 (+) 327 WP_017724645.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 795 a.a.        Molecular weight: 89629.14 Da        Isoelectric Point: 4.4549

>NTDB_id=530606 JMB28_RS06620 WP_039068295.1 1384598..1386985(+) (recD2) [Staphylococcus shinii strain 14AME19]
MENPTLFNNSMIKGTVDAILFQNKENFYTVLKVDTIESNETFDSMPTIVGFFPDIAEGDVYTFKGQVVTHAKYGKQLKAE
TFEKELPQTKEAIISYLSSDLFKGIGKKTAQSIVNKLGENAISDILNDPSILEKVPSLPKKKQKQIAEQIASNQETEQII
IRLHDLGFGPKLAMAIYQAYLGETLNVVENKPYQLVYDVKGIGFNKADILARNVGIQFNDAERLKAGLLYVLEEECIKQG
HTYLPTNNVLEMTQDMLSQPPGELIEIQQLEQVLQDLVNDTKLIQQENEVAIPSLYYSELKSVQNLYRNFSYTNKLKEIE
QSDLLLEIGEIEERNKVTYADSQREALQTAINSKIMLLTGGPGTGKTTVIKGIVELYAELHGLSLDYDDYQNDDYPVVLG
APTGRASKRLSESTGLEAMTIHRLIGWNQDTQPEDILDNEISAKLIIIDEMSMVDTWLFHQFLSAVPIDAQVILVGDEDQ
LPSVGPGQVFKDLIDSKVIPRVNLTEVYRQQDGSSIIELAHRMKLGEAIDITQRFHDRNFINCTTEQIPSVVEKVVSSAV
NKGYDMSDIQVLAPMYKGSAGIKKLNTILQDILNPKEQDTREIEFGDIVFRKGDKVLQLVNRPSDNIFNGDIGVIVGIFW
AKENALNKDVLVVDFEGNEITFVRQDLMELTHAYCTSIHKSQGSEFPIVIMPMVKQYFRMLQKPILYTGLTRAKQSLVFL
GDPQAFDIGLKTHGQVRMTQLCTFLKMYFNNDEETESDDVSNSFDADIILSEENIFKINPMINMGEFSPYDFVED

Nucleotide


Download         Length: 2388 bp        

>NTDB_id=530606 JMB28_RS06620 WP_039068295.1 1384598..1386985(+) (recD2) [Staphylococcus shinii strain 14AME19]
ATGGAAAACCCTACACTATTTAATAATTCAATGATTAAAGGGACCGTTGATGCGATTTTGTTTCAAAACAAAGAAAATTT
TTATACGGTTTTAAAAGTTGATACAATTGAATCCAACGAGACATTCGATTCAATGCCTACAATTGTAGGGTTTTTTCCAG
ATATTGCAGAAGGTGACGTTTATACATTTAAAGGGCAAGTAGTTACACATGCGAAATATGGTAAACAATTAAAAGCTGAA
ACTTTTGAAAAAGAGTTACCACAAACCAAAGAAGCGATTATAAGTTATTTATCAAGTGATCTTTTTAAAGGAATAGGTAA
AAAAACGGCTCAAAGTATAGTAAATAAATTAGGTGAGAATGCGATTAGTGACATTTTAAATGATCCAAGTATATTGGAAA
AAGTACCTAGTTTACCTAAAAAGAAACAAAAACAAATCGCTGAACAAATCGCAAGTAATCAAGAAACAGAACAAATTATT
ATTCGACTTCATGATTTGGGTTTTGGGCCAAAGTTAGCAATGGCTATATACCAAGCATATTTAGGCGAAACGCTCAACGT
AGTTGAAAACAAGCCTTATCAACTTGTATATGACGTCAAAGGTATCGGTTTTAATAAGGCGGACATATTAGCGCGTAATG
TCGGCATTCAATTTAACGATGCAGAACGTCTTAAAGCAGGGTTGCTTTATGTCTTAGAAGAAGAATGCATAAAACAGGGT
CATACTTATTTACCAACTAATAATGTACTAGAGATGACACAAGATATGTTGTCACAACCACCAGGCGAGTTAATAGAAAT
ACAACAATTAGAACAAGTGTTACAGGATTTAGTCAATGACACTAAATTAATCCAACAAGAAAATGAAGTTGCGATTCCAA
GTCTATACTATTCAGAACTGAAAAGCGTTCAAAATTTATACCGTAATTTTAGTTATACAAATAAACTTAAAGAAATTGAA
CAATCTGATTTGCTACTTGAAATCGGAGAAATTGAGGAACGAAATAAAGTAACATATGCAGATTCTCAAAGAGAAGCCTT
GCAAACAGCTATTAATTCTAAAATCATGTTGCTAACCGGTGGACCAGGCACAGGAAAAACTACTGTCATTAAAGGAATTG
TTGAACTGTATGCAGAGTTGCATGGTTTGTCATTAGATTATGATGATTATCAAAATGATGATTATCCAGTAGTCCTAGGT
GCGCCAACTGGCCGAGCATCAAAACGTTTGTCAGAGTCAACTGGATTGGAAGCTATGACGATACATCGTCTAATAGGTTG
GAATCAAGATACACAACCGGAAGATATTTTGGATAATGAGATTTCTGCAAAACTTATTATTATAGATGAAATGTCCATGG
TTGATACATGGTTATTCCATCAGTTTTTGAGTGCTGTACCTATCGATGCGCAAGTTATACTAGTCGGGGATGAAGATCAA
CTGCCATCTGTCGGACCAGGTCAAGTATTTAAGGATTTAATTGATTCGAAAGTGATTCCTCGTGTGAATTTAACTGAAGT
TTACCGCCAACAAGATGGTTCAAGTATTATTGAATTAGCGCATAGGATGAAACTAGGAGAAGCAATTGATATTACACAAA
GATTTCATGATCGTAATTTTATAAACTGTACAACAGAACAGATACCCTCTGTTGTCGAAAAAGTAGTATCAAGTGCAGTG
AATAAAGGTTATGATATGAGTGATATTCAAGTATTAGCTCCGATGTATAAAGGGTCTGCAGGTATTAAGAAACTAAATAC
AATATTGCAAGATATCTTGAACCCTAAAGAACAGGATACTCGAGAAATTGAGTTTGGTGATATTGTTTTTAGAAAAGGTG
ATAAGGTATTACAACTTGTTAACCGACCAAGCGATAATATATTTAACGGTGATATTGGGGTTATTGTAGGCATCTTCTGG
GCTAAAGAAAATGCATTAAACAAAGATGTTTTGGTGGTTGATTTTGAAGGTAACGAGATTACATTTGTTCGCCAAGACTT
AATGGAATTAACGCATGCTTATTGTACATCAATCCATAAGTCACAAGGTTCAGAATTTCCAATCGTTATTATGCCGATGG
TTAAACAGTACTTTAGAATGCTACAAAAACCCATATTATATACTGGTTTAACACGTGCCAAACAGTCACTTGTGTTCTTA
GGAGATCCACAAGCATTTGATATTGGTCTCAAGACTCATGGCCAAGTGAGAATGACACAATTGTGTACTTTTCTTAAAAT
GTACTTTAATAATGATGAAGAAACTGAAAGTGATGATGTCAGTAATTCTTTTGATGCTGATATTATTTTATCTGAAGAAA
ATATATTTAAGATAAATCCAATGATTAATATGGGAGAGTTTTCCCCATATGACTTCGTTGAAGATTGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

AAA domain (AAA_30)

(339-545)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.566

100

0.506