Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   LLUC073_RS01745 Genome accession   NZ_CP068698
Coordinates   337312..338250 (+) Length   312 a.a.
NCBI ID   WP_318299098.1    Uniprot ID   -
Organism   Lactococcus cremoris strain UC073     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 332312..343250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC073_RS01725 (LLUC073_01690) - 333005..333223 (+) 219 WP_003131683.1 YdbC family protein -
  LLUC073_RS01730 (LLUC073_01695) - 333609..334720 (+) 1112 WP_088792927.1 IS3-like element IS981 family transposase -
  LLUC073_RS01735 (LLUC073_01700) typA 335040..336872 (+) 1833 WP_031286284.1 translational GTPase TypA -
  LLUC073_RS01740 (LLUC073_01705) - 336973..337224 (+) 252 WP_011677086.1 DUF3165 family protein -
  LLUC073_RS01745 (LLUC073_01710) comYH 337312..338250 (+) 939 WP_318299098.1 class I SAM-dependent methyltransferase Machinery gene
  LLUC073_RS01750 (LLUC073_01715) - 338442..339629 (+) 1188 WP_282670872.1 acetate kinase -
  LLUC073_RS01755 (LLUC073_01720) - 339788..340975 (+) 1188 WP_282670871.1 acetate kinase -
  LLUC073_RS01760 (LLUC073_01725) - 341105..341557 (+) 453 WP_011677082.1 hypothetical protein -
  LLUC073_RS01765 (LLUC073_01730) pyrH 341642..342358 (+) 717 WP_004254608.1 UMP kinase -
  LLUC073_RS01770 (LLUC073_01735) frr 342514..343071 (+) 558 WP_011677081.1 ribosome recycling factor -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34706.74 Da        Isoelectric Point: 4.3603

>NTDB_id=530455 LLUC073_RS01745 WP_318299098.1 337312..338250(+) (comYH) [Lactococcus cremoris strain UC073]
MNMEKVAQGFELVVENITKLSEKLDIDFYDAFVEQNAAFLDGTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQANHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
YAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVAKNFEVAATDGHTFAHHLLIEQSFNYLKDGAFAVFLAPEDLLTSV
QGPLLKEWISQHGSIMAVITLPSSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEIFMEEFTKTVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=530455 LLUC073_RS01745 WP_318299098.1 337312..338250(+) (comYH) [Lactococcus cremoris strain UC073]
ATGAACATGGAAAAAGTGGCTCAAGGTTTTGAGCTGGTAGTTGAAAATATTACAAAATTATCTGAGAAATTAGATATAGA
TTTTTATGATGCTTTTGTGGAACAAAATGCTGCTTTTTTAGATGGTACTGACCAAGGAATTGTTGAGCTGTCAGTAAATA
ATGACAAACTCCGTCAGTTAAATTTATCAAATAAAGAATGGCAAAAACTTTTTCAATTTGTTTTATTAAAAGGTTCGCAA
GTTGCGCCTCTTCAGGCAAATCATGCCATGACTCCTGATGCAATTGGTCTAATTTTCAACTTTATCATTGAACATCTCAA
TAAAAATTCTGAACTTCGATTAATTGAGTTTGGTTCTGGTATGGGTAATCTTGCGGAAACATTGCTTGTTAATCTTAATA
AAAAAGTAGATTATGTTGGTTTTGAAGTCGATGATTTACTTTTAGATTTGTCAGCTTCAATGGCTGAAATCATGGGAAGC
TATGCCGAATTTATGCAAATTGATGCGGTTCAAAAACGGTTGATGGAGCCAGCTGATGTTGTTGTTAGTGATTTGCCAAT
CGGTTTTTATCCAGATGATGAAGTTGCGAAAAATTTTGAAGTCGCTGCTACTGATGGACACACCTTTGCACATCATTTGT
TGATTGAACAATCATTTAATTACTTGAAAGATGGTGCTTTTGCAGTTTTCTTAGCACCGGAGGATTTACTGACAAGTGTA
CAAGGCCCACTTTTAAAAGAATGGATTAGTCAGCATGGAAGTATTATGGCGGTAATTACTTTACCAAGCTCACTTTTTAA
TGCTGATGCTAAAGCAATTTATGTCTTGAAAAAAGGGCCTGCTGCTCATGCGACCTTTGCTCATCCTTTGTCATCATTGA
CAGACAGAGAAAGTTTAGAAATCTTTATGGAAGAATTTACAAAAACTGTAAAGTTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

48.882

100

0.49
  comYH Streptococcus mutans UA159

48.562

100

0.487