Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LLUC073_RS00855 Genome accession   NZ_CP068698
Coordinates   160045..160833 (+) Length   262 a.a.
NCBI ID   WP_101961305.1    Uniprot ID   -
Organism   Lactococcus cremoris strain UC073     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 155045..165833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC073_RS00830 (LLUC073_00800) - 155415..156206 (+) 792 WP_021215202.1 DNA/RNA non-specific endonuclease -
  LLUC073_RS00835 (LLUC073_00805) - 156371..156580 (+) 210 WP_010905160.1 hypothetical protein -
  LLUC073_RS00840 (LLUC073_00810) - 156592..156831 (+) 240 WP_010905161.1 hypothetical protein -
  LLUC073_RS00845 (LLUC073_00815) - 157028..158611 (+) 1584 WP_282670890.1 glycosyltransferase -
  LLUC073_RS00850 (LLUC073_00820) - 158679..159893 (+) 1215 WP_282670891.1 pyridoxal phosphate-dependent aminotransferase -
  LLUC073_RS00855 (LLUC073_00825) codY 160045..160833 (+) 789 WP_101961305.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LLUC073_RS00860 (LLUC073_00830) gatC 161811..162116 (+) 306 WP_010905163.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  LLUC073_RS00865 (LLUC073_00835) gatA 162116..163582 (+) 1467 WP_282670892.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  LLUC073_RS00870 (LLUC073_00840) gatB 163582..165015 (+) 1434 WP_282670893.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29186.49 Da        Isoelectric Point: 4.4768

>NTDB_id=530453 LLUC073_RS00855 WP_101961305.1 160045..160833(+) (codY) [Lactococcus cremoris strain UC073]
MATLLEKTRKITAILQDGVTDLQQELPYNSMTERLANVIDCNACVINTKGELLGYSLPYNTNNDRVDQFFYDRKLPDEYV
RAAVRIYDTMANVPVDRPLAIFPEESLDDFPKGVTTLAPIYGSGMRLGTFIMWREDGEFTDDDLVLVELATTVIGVQLSN
LKLEQMEENIRKDTMATMAVNTLSYSEMKAVKAIIEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSLG
MKGTYLKVLNTGLFDKLAGRNF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=530453 LLUC073_RS00855 WP_101961305.1 160045..160833(+) (codY) [Lactococcus cremoris strain UC073]
GTGGCTACATTACTTGAAAAAACACGTAAAATCACCGCGATTTTGCAAGATGGAGTGACCGATTTGCAACAAGAGTTGCC
ATATAACAGTATGACTGAACGCTTGGCAAACGTCATTGATTGCAATGCATGTGTGATTAATACGAAGGGCGAGTTGCTTG
GTTACTCATTGCCTTATAATACAAACAATGACCGTGTTGACCAATTTTTCTATGATCGTAAATTGCCTGATGAATATGTT
CGTGCGGCAGTACGTATCTACGATACAATGGCAAACGTTCCTGTTGACCGTCCATTAGCAATTTTCCCAGAAGAAAGTCT
TGACGATTTTCCAAAAGGTGTGACAACTTTAGCACCTATTTATGGTTCTGGAATGCGTTTGGGAACATTTATCATGTGGC
GTGAAGACGGCGAATTCACTGATGATGATTTGGTCTTAGTTGAACTTGCAACAACAGTAATTGGTGTTCAACTCTCAAAT
CTTAAACTTGAACAAATGGAAGAAAATATCCGTAAAGACACCATGGCAACTATGGCTGTTAACACACTTTCATATTCAGA
AATGAAAGCTGTTAAAGCAATCATTGAAGAGCTTGATGGTGAAGAAGGGCATGTTATCGCTTCTGTCATTGCTGACAAGA
TTGGGATTACACGTTCAGTCATCGTTAACGCTTTGCGTAAACTCGAATCTGCTGGTGTAATTGAATCACGTTCACTTGGT
ATGAAAGGAACTTATCTTAAAGTTCTTAATACTGGTTTATTTGATAAACTTGCAGGACGTAATTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(201-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

99.618

100

0.996
  codY Bacillus subtilis subsp. subtilis str. 168

47.843

97.328

0.466