Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   JHS79_RS00685 Genome accession   NZ_CP068641
Coordinates   148640..149365 (-) Length   241 a.a.
NCBI ID   WP_140125136.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain VP157     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 143640..154365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHS79_RS00660 (JHS79_00665) - 144760..145251 (+) 492 WP_005458943.1 type II secretion system protein M -
  JHS79_RS00665 (JHS79_00670) - 145253..146014 (+) 762 WP_020904372.1 type II secretion system protein N -
  JHS79_RS00670 (JHS79_00675) cysQ 146300..147127 (-) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  JHS79_RS00675 (JHS79_00680) nudE 147168..147737 (-) 570 WP_021448936.1 ADP compounds hydrolase NudE -
  JHS79_RS00680 (JHS79_00685) nfuA 147958..148542 (-) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  JHS79_RS00685 (JHS79_00690) comF 148640..149365 (-) 726 WP_140125136.1 ComF family protein Machinery gene
  JHS79_RS00690 (JHS79_00695) bioH 149450..150217 (+) 768 WP_180700479.1 pimeloyl-ACP methyl ester esterase BioH -
  JHS79_RS00695 (JHS79_00700) - 150341..150805 (+) 465 WP_005459035.1 hypothetical protein -
  JHS79_RS00700 (JHS79_00705) - 150941..153262 (-) 2322 WP_140125142.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27731.91 Da        Isoelectric Point: 8.9973

>NTDB_id=530147 JHS79_RS00685 WP_140125136.1 148640..149365(-) (comF) [Vibrio parahaemolyticus strain VP157]
MLSHHWQNIMHRVLSSQCGLCRFPIQATAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVHALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAAHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRKLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=530147 JHS79_RS00685 WP_140125136.1 148640..149365(-) (comF) [Vibrio parahaemolyticus strain VP157]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TACCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCACCGTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCACGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGCTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAA
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

49.16

98.755

0.485