Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   U064_RS06645 Genome accession   NC_022911
Coordinates   1352989..1353255 (-) Length   88 a.a.
NCBI ID   WP_038420173.1    Uniprot ID   -
Organism   Helicobacter pylori BM012S     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1347989..1358255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U064_RS06625 (U064_1333) - 1348922..1349605 (+) 684 WP_038420169.1 hypothetical protein -
  U064_RS06630 (U064_1334) - 1349687..1349938 (-) 252 Protein_1276 tyrosine-type recombinase/integrase -
  U064_RS06635 (U064_1335) - 1349935..1350570 (-) 636 Protein_1277 toprim domain-containing protein -
  U064_RS06640 (U064_1336) comB4 1350573..1352942 (-) 2370 WP_023592496.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  U064_RS06645 comB3 1352989..1353255 (-) 267 WP_038420173.1 hypothetical protein Machinery gene
  U064_RS06650 (U064_1338) - 1353256..1353558 (-) 303 WP_000850076.1 hypothetical protein -
  U064_RS06655 (U064_1339) - 1353555..1355078 (-) 1524 WP_023592498.1 hypothetical protein -
  U064_RS06660 (U064_1340) - 1355084..1355377 (-) 294 WP_023592499.1 hypothetical protein -
  U064_RS06665 (U064_1341) - 1355396..1356175 (-) 780 WP_023592500.1 hypothetical protein -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10104.94 Da        Isoelectric Point: 5.5485

>NTDB_id=53008 U064_RS06645 WP_038420173.1 1352989..1353255(-) (comB3) [Helicobacter pylori BM012S]
MALHIVCVESINIREISKRGTFLGLNLDSWIVSFLMSAWLLSFQPLYAMGLMASCVFIFYILEFFDEDITAILHALFTLR
TGARNYYA

Nucleotide


Download         Length: 267 bp        

>NTDB_id=53008 U064_RS06645 WP_038420173.1 1352989..1353255(-) (comB3) [Helicobacter pylori BM012S]
ATGGCATTGCATATTGTTTGTGTTGAAAGTATCAACATTAGAGAAATCAGCAAAAGAGGAACTTTTTTGGGATTAAACTT
GGATAGTTGGATTGTTAGTTTCTTAATGTCGGCATGGTTACTTTCATTCCAACCACTTTATGCTATGGGCTTAATGGCTA
GTTGTGTGTTTATATTCTACATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCATGCGCTTTTCACATTAAGA
ACAGGAGCTAGAAATTATTATGCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

40.964

94.318

0.386

Multiple sequence alignment