Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   U064_RS06145 Genome accession   NC_022911
Coordinates   1254032..1255207 (+) Length   391 a.a.
NCBI ID   WP_023592419.1    Uniprot ID   -
Organism   Helicobacter pylori BM012S     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1249032..1260207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U064_RS06120 (U064_1229) - 1249318..1250214 (+) 897 WP_000697532.1 OriC activity response regulator -
  U064_RS06125 (U064_1230) - 1250440..1251306 (+) 867 WP_080261094.1 5'-3' exonuclease -
  U064_RS06130 (U064_1231) - 1251370..1252620 (-) 1251 WP_023592416.1 hypothetical protein -
  U064_RS06135 (U064_1232) - 1252788..1253654 (+) 867 WP_023592417.1 DnaJ C-terminal domain-containing protein -
  U064_RS06140 (U064_1233) - 1253664..1254035 (+) 372 WP_023592418.1 heat shock protein transcriptional repressor HspR -
  U064_RS06145 (U064_1234) rarA 1254032..1255207 (+) 1176 WP_023592419.1 replication-associated recombination protein A Machinery gene
  U064_RS06150 fur 1255370..1255823 (+) 454 Protein_1181 ferric iron uptake transcriptional regulator -
  U064_RS06155 (U064_1237) - 1255844..1256341 (-) 498 WP_038420134.1 DUF2147 domain-containing protein -
  U064_RS06160 (U064_1238) - 1256338..1256874 (-) 537 WP_023592422.1 YhcH/YjgK/YiaL family protein -
  U064_RS06165 (U064_1239) fliY 1256903..1257766 (-) 864 WP_023592423.1 flagellar motor switch protein FliY -
  U064_RS06170 (U064_1240) fliM 1257770..1258834 (-) 1065 WP_000763562.1 flagellar motor switch protein FliM -
  U064_RS06175 (U064_1241) - 1258827..1259594 (-) 768 WP_000602430.1 RNA polymerase sigma factor FliA -
  U064_RS06180 (U064_1242) - 1259572..1259886 (-) 315 WP_000868000.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43809.52 Da        Isoelectric Point: 7.7612

>NTDB_id=53004 U064_RS06145 WP_023592419.1 1254032..1255207(+) (rarA) [Helicobacter pylori BM012S]
MSLTSLLNPTSLEDFLGQEHLIGKDAPLFKALKSKHFPHAFFYGPPGVGKTSLAQIIAYMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLIHAIRSRSFIFELTPLKKSDLDKLCAK
ALTLLKKQIEPGAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=53004 U064_RS06145 WP_023592419.1 1254032..1255207(+) (rarA) [Helicobacter pylori BM012S]
ATGAGCCTGACTTCGCTTTTAAACCCCACAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCTTAAAATCCAAACACTTCCCCCACGCCTTTTTCTATGGCCCTCCTGGCGTGGGCAAAACAAGCCTGG
CTCAAATCATCGCCTATATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAGCCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATTTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
TCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTGACCCCCCTAAAAAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTGGCGCTAAAACCTACCTTTTAAACAACAGCGCTGGCGACGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAACCTTACTAGCGCGTTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAATGCTTCCATCTATTATTTGGCGCGCTTGATTGCTGGTGGGGAAAATCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAAGGCTCACTCTACCCTATTCCTAAACACCTATTGCCTAACGCTAA
AGATTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

36.893

100

0.389

Multiple sequence alignment