Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   JMJ71_RS07345 Genome accession   NZ_CP068581
Coordinates   1392352..1392867 (-) Length   171 a.a.
NCBI ID   WP_002780549.1    Uniprot ID   A0A3Z9GFK4
Organism   Campylobacter coli strain CC19CH075     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1387352..1397867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMJ71_RS07330 (JMJ71_07330) - 1387453..1389270 (-) 1818 WP_212145264.1 motility associated factor glycosyltransferase family protein -
  JMJ71_RS07335 (JMJ71_07335) - 1389267..1391090 (-) 1824 WP_212145262.1 motility associated factor glycosyltransferase family protein -
  JMJ71_RS07340 (JMJ71_07340) - 1391101..1392352 (-) 1252 Protein_1435 DUF2920 family protein -
  JMJ71_RS07345 (JMJ71_07345) ctsG 1392352..1392867 (-) 516 WP_002780549.1 type II secretion system protein Machinery gene
  JMJ71_RS07350 (JMJ71_07350) tsaD 1392871..1393878 (-) 1008 WP_002777752.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  JMJ71_RS07355 (JMJ71_07355) - 1393875..1395269 (-) 1395 WP_002838049.1 M99 family carboxypeptidase catalytic domain-containing protein -
  JMJ71_RS07360 (JMJ71_07360) dxr 1395266..1396342 (-) 1077 WP_002777756.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  JMJ71_RS07365 (JMJ71_07365) - 1396339..1397064 (-) 726 WP_057038164.1 phosphatidate cytidylyltransferase -
  JMJ71_RS07370 (JMJ71_07370) - 1397073..1397411 (-) 339 WP_002777761.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18764.60 Da        Isoelectric Point: 6.4693

>NTDB_id=529666 JMJ71_RS07345 WP_002780549.1 1392352..1392867(-) (ctsG) [Campylobacter coli strain CC19CH075]
MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDEKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=529666 JMJ71_RS07345 WP_002780549.1 1392352..1392867(-) (ctsG) [Campylobacter coli strain CC19CH075]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAACAATCTTAAAACTTTAATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGAGAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Z9GFK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

91.813

100

0.918