Detailed information
Bioinformatically predicted
Overview
| Name | ctsP | Type | Machinery gene |
| Locus tag | JMJ70_RS01860 | Genome accession | NZ_CP068565 |
| Coordinates | 353159..353755 (+) | Length | 198 a.a. |
| NCBI ID | WP_002779314.1 | Uniprot ID | A0A0Q2JMT7 |
| Organism | Campylobacter coli strain CC19DZ036 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 313658..358593 | 353159..353755 | within | 0 |
Gene organization within MGE regions
Location: 313658..358593
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMJ70_RS01565 (JMJ70_01565) | - | 313658..314287 (+) | 630 | WP_002784646.1 | S24 family peptidase | - |
| JMJ70_RS01570 (JMJ70_01570) | - | 314368..314688 (+) | 321 | WP_002784647.1 | hypothetical protein | - |
| JMJ70_RS01575 (JMJ70_01575) | - | 314698..314892 (+) | 195 | WP_002784648.1 | hypothetical protein | - |
| JMJ70_RS01580 (JMJ70_01580) | - | 314972..315259 (+) | 288 | WP_002784651.1 | hypothetical protein | - |
| JMJ70_RS01585 (JMJ70_01585) | - | 315287..316102 (-) | 816 | WP_057981102.1 | DNA adenine methylase | - |
| JMJ70_RS01590 (JMJ70_01590) | - | 316207..316695 (-) | 489 | WP_060794138.1 | phage virion morphogenesis protein | - |
| JMJ70_RS01595 (JMJ70_01595) | - | 316699..319032 (-) | 2334 | WP_057981101.1 | phage tail tape measure protein | - |
| JMJ70_RS01600 (JMJ70_01600) | - | 319074..319379 (+) | 306 | WP_002791365.1 | hypothetical protein | - |
| JMJ70_RS01605 (JMJ70_01605) | - | 319491..319730 (-) | 240 | WP_002791367.1 | phage tail assembly protein | - |
| JMJ70_RS01610 (JMJ70_01610) | - | 319834..320343 (-) | 510 | WP_002794205.1 | phage major tail tube protein | - |
| JMJ70_RS01615 (JMJ70_01615) | - | 320367..321560 (-) | 1194 | WP_002794204.1 | phage tail sheath family protein | - |
| JMJ70_RS01620 (JMJ70_01620) | - | 321571..322584 (-) | 1014 | WP_002794203.1 | hypothetical protein | - |
| JMJ70_RS01625 (JMJ70_01625) | - | 322581..322967 (-) | 387 | WP_002789987.1 | DUF1353 domain-containing protein | - |
| JMJ70_RS01630 (JMJ70_01630) | - | 322960..324717 (-) | 1758 | WP_002784666.1 | radical SAM/SPASM domain-containing protein | - |
| JMJ70_RS01635 (JMJ70_01635) | - | 324717..325352 (-) | 636 | WP_002784668.1 | hypothetical protein | - |
| JMJ70_RS01640 (JMJ70_01640) | - | 325362..326396 (-) | 1035 | WP_002827111.1 | phage tail protein | - |
| JMJ70_RS01645 (JMJ70_01645) | - | 326396..327016 (-) | 621 | WP_057981097.1 | phage tail protein I | - |
| JMJ70_RS01650 (JMJ70_01650) | - | 327105..328271 (-) | 1167 | WP_057981096.1 | baseplate J/gp47 family protein | - |
| JMJ70_RS01655 (JMJ70_01655) | - | 328268..328558 (-) | 291 | WP_057981095.1 | GPW/gp25 family protein | - |
| JMJ70_RS01660 (JMJ70_01660) | - | 328555..328767 (-) | 213 | WP_002791385.1 | hypothetical protein | - |
| JMJ70_RS01665 (JMJ70_01665) | - | 328866..329264 (-) | 399 | Protein_321 | phage baseplate assembly protein V | - |
| JMJ70_RS01670 (JMJ70_01670) | - | 329264..329578 (-) | 315 | WP_038840904.1 | phage holin family protein | - |
| JMJ70_RS01675 (JMJ70_01675) | - | 329690..329923 (-) | 234 | WP_057037192.1 | hypothetical protein | - |
| JMJ70_RS01680 (JMJ70_01680) | - | 329920..330255 (-) | 336 | WP_057037193.1 | hypothetical protein | - |
| JMJ70_RS01685 (JMJ70_01685) | - | 330265..330654 (-) | 390 | WP_057037194.1 | D-Ala-D-Ala carboxypeptidase family metallohydrolase | - |
| JMJ70_RS01690 (JMJ70_01690) | - | 330804..331238 (+) | 435 | WP_057037195.1 | hypothetical protein | - |
| JMJ70_RS01695 (JMJ70_01695) | - | 331242..332066 (+) | 825 | WP_060794139.1 | phage protease | - |
| JMJ70_RS01700 (JMJ70_01700) | - | 332068..332565 (+) | 498 | WP_057037290.1 | hypothetical protein | - |
| JMJ70_RS01705 (JMJ70_01705) | - | 332569..333546 (+) | 978 | WP_057037199.1 | major capsid protein | - |
| JMJ70_RS01710 (JMJ70_01710) | - | 333661..334119 (+) | 459 | WP_002784509.1 | phage protein Gp36 family protein | - |
| JMJ70_RS01715 (JMJ70_01715) | - | 334112..334594 (+) | 483 | WP_057037200.1 | DUF1804 family protein | - |
| JMJ70_RS01720 (JMJ70_01720) | terL | 334594..336264 (+) | 1671 | WP_060785296.1 | phage terminase large subunit | - |
| JMJ70_RS01725 (JMJ70_01725) | - | 336274..337644 (+) | 1371 | WP_060785297.1 | DUF935 family protein | - |
| JMJ70_RS01730 (JMJ70_01730) | - | 337646..338887 (+) | 1242 | WP_060785298.1 | phage minor head protein | - |
| JMJ70_RS01735 (JMJ70_01735) | - | 339019..339393 (+) | 375 | WP_002791400.1 | phage tail protein | - |
| JMJ70_RS01740 (JMJ70_01740) | - | 339386..339577 (+) | 192 | WP_002793900.1 | tail protein X | - |
| JMJ70_RS01745 (JMJ70_01745) | - | 339571..340548 (+) | 978 | WP_144621071.1 | phage late control D family protein | - |
| JMJ70_RS01750 (JMJ70_01750) | - | 340545..340829 (-) | 285 | WP_002791403.1 | Mor transcription activator family protein | - |
| JMJ70_RS01755 (JMJ70_01755) | - | 340922..341593 (+) | 672 | WP_052783108.1 | endonuclease | - |
| JMJ70_RS01760 (JMJ70_01760) | - | 341585..341755 (-) | 171 | WP_171839022.1 | hypothetical protein | - |
| JMJ70_RS01765 (JMJ70_01765) | - | 341906..342355 (-) | 450 | WP_002834644.1 | phage protein GemA/Gp16 family protein | - |
| JMJ70_RS01770 (JMJ70_01770) | - | 342352..343044 (-) | 693 | WP_002791409.1 | hypothetical protein | - |
| JMJ70_RS01775 (JMJ70_01775) | - | 343044..343313 (-) | 270 | WP_002784531.1 | hypothetical protein | - |
| JMJ70_RS01780 (JMJ70_01780) | - | 343310..344272 (-) | 963 | WP_002834643.1 | hypothetical protein | - |
| JMJ70_RS01785 (JMJ70_01785) | - | 344381..344758 (-) | 378 | WP_002834642.1 | YopX family protein | - |
| JMJ70_RS01790 (JMJ70_01790) | - | 344783..345325 (-) | 543 | WP_002804623.1 | type I restriction-modification system subunit M | - |
| JMJ70_RS01795 (JMJ70_01795) | - | 345330..345707 (-) | 378 | WP_002843359.1 | YopX family protein | - |
| JMJ70_RS01800 (JMJ70_01800) | - | 345704..345976 (-) | 273 | WP_212202771.1 | hypothetical protein | - |
| JMJ70_RS01805 (JMJ70_01805) | - | 346042..346254 (-) | 213 | WP_038817395.1 | hypothetical protein | - |
| JMJ70_RS01810 (JMJ70_01810) | - | 346251..346736 (-) | 486 | WP_002870190.1 | host-nuclease inhibitor Gam family protein | - |
| JMJ70_RS01815 (JMJ70_01815) | - | 346843..347184 (-) | 342 | WP_002791419.1 | DUF4406 domain-containing protein | - |
| JMJ70_RS01820 (JMJ70_01820) | - | 347241..347426 (-) | 186 | WP_002784541.1 | hypothetical protein | - |
| JMJ70_RS01825 (JMJ70_01825) | - | 347423..347614 (-) | 192 | WP_002793918.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| JMJ70_RS01830 (JMJ70_01830) | - | 347618..348541 (-) | 924 | WP_002843363.1 | AAA family ATPase | - |
| JMJ70_RS01835 (JMJ70_01835) | - | 348612..350684 (-) | 2073 | WP_212202772.1 | DDE-type integrase/transposase/recombinase | - |
| JMJ70_RS01840 (JMJ70_01840) | - | 350685..350885 (-) | 201 | WP_002784549.1 | hypothetical protein | - |
| JMJ70_RS01845 (JMJ70_01845) | - | 351037..351684 (+) | 648 | WP_002784551.1 | S24 family peptidase | - |
| JMJ70_RS01850 (JMJ70_01850) | - | 351700..352407 (+) | 708 | WP_002784553.1 | hypothetical protein | - |
| JMJ70_RS01855 (JMJ70_01855) | - | 352504..353166 (+) | 663 | Protein_359 | pilus (MSHA type) biogenesis protein MshL | - |
| JMJ70_RS01860 (JMJ70_01860) | ctsP | 353159..353755 (+) | 597 | WP_002779314.1 | ATP-binding protein | Machinery gene |
| JMJ70_RS01865 (JMJ70_01865) | - | 353752..354348 (+) | 597 | WP_002779313.1 | CDC27 family protein | - |
| JMJ70_RS01870 (JMJ70_01870) | ctsE | 354341..355903 (+) | 1563 | WP_002779312.1 | GspE/PulE family protein | Machinery gene |
| JMJ70_RS01875 (JMJ70_01875) | ctsF | 355890..357065 (+) | 1176 | WP_002781160.1 | type II secretion system F family protein | Machinery gene |
| JMJ70_RS01880 (JMJ70_01880) | - | 357062..357826 (-) | 765 | WP_002784060.1 | TSUP family transporter | - |
| JMJ70_RS01885 (JMJ70_01885) | - | 357829..358593 (-) | 765 | WP_002781156.1 | TIGR02757 family protein | - |
Sequence
Protein
Download Length: 198 a.a. Molecular weight: 23633.42 Da Isoelectric Point: 9.1569
>NTDB_id=529527 JMJ70_RS01860 WP_002779314.1 353159..353755(+) (ctsP) [Campylobacter coli strain CC19DZ036]
MNNIIAFRQECFDQINALLKNKALILLWGKSGSGKSVLLQRLALYHNEDFTNEIFTDEKDFHHFIQDKKRKIIILDEVGM
YSPNVLELIRIYSDEMSFVLSSHKKINLFEEEYFKSRFSAIFWLQKPDINELSNYIKMKFNQDFPQKSLKFLMKIYQGNL
RYLDKILQSFCELNTYLNNKKSQDYILRLSALEQGFLK
MNNIIAFRQECFDQINALLKNKALILLWGKSGSGKSVLLQRLALYHNEDFTNEIFTDEKDFHHFIQDKKRKIIILDEVGM
YSPNVLELIRIYSDEMSFVLSSHKKINLFEEEYFKSRFSAIFWLQKPDINELSNYIKMKFNQDFPQKSLKFLMKIYQGNL
RYLDKILQSFCELNTYLNNKKSQDYILRLSALEQGFLK
Nucleotide
Download Length: 597 bp
>NTDB_id=529527 JMJ70_RS01860 WP_002779314.1 353159..353755(+) (ctsP) [Campylobacter coli strain CC19DZ036]
ATGAATAATATAATTGCTTTTAGACAAGAATGTTTTGATCAAATCAATGCCTTATTAAAAAATAAAGCTTTGATTTTACT
TTGGGGTAAAAGCGGTAGTGGGAAAAGTGTTTTATTGCAAAGACTTGCGCTATATCATAATGAAGATTTTACCAATGAAA
TTTTTACAGATGAAAAAGATTTTCATCATTTTATACAAGATAAAAAACGAAAAATTATCATACTAGATGAAGTGGGGATG
TATAGTCCTAATGTATTAGAACTAATTCGGATTTATAGCGATGAAATGAGTTTTGTGCTTAGCTCGCATAAAAAAATCAA
TCTTTTTGAAGAGGAGTATTTTAAAAGTCGTTTTAGTGCTATTTTTTGGCTTCAAAAACCTGATATAAATGAATTAAGCA
ATTATATCAAAATGAAATTTAATCAAGACTTTCCCCAAAAATCTTTAAAATTTCTTATGAAAATTTATCAAGGAAATTTA
AGGTATTTAGACAAGATACTTCAAAGTTTTTGCGAATTAAACACCTATTTAAACAATAAAAAAAGTCAAGATTATATTTT
AAGACTAAGCGCATTAGAACAGGGATTTTTAAAATGA
ATGAATAATATAATTGCTTTTAGACAAGAATGTTTTGATCAAATCAATGCCTTATTAAAAAATAAAGCTTTGATTTTACT
TTGGGGTAAAAGCGGTAGTGGGAAAAGTGTTTTATTGCAAAGACTTGCGCTATATCATAATGAAGATTTTACCAATGAAA
TTTTTACAGATGAAAAAGATTTTCATCATTTTATACAAGATAAAAAACGAAAAATTATCATACTAGATGAAGTGGGGATG
TATAGTCCTAATGTATTAGAACTAATTCGGATTTATAGCGATGAAATGAGTTTTGTGCTTAGCTCGCATAAAAAAATCAA
TCTTTTTGAAGAGGAGTATTTTAAAAGTCGTTTTAGTGCTATTTTTTGGCTTCAAAAACCTGATATAAATGAATTAAGCA
ATTATATCAAAATGAAATTTAATCAAGACTTTCCCCAAAAATCTTTAAAATTTCTTATGAAAATTTATCAAGGAAATTTA
AGGTATTTAGACAAGATACTTCAAAGTTTTTGCGAATTAAACACCTATTTAAACAATAAAAAAAGTCAAGATTATATTTT
AAGACTAAGCGCATTAGAACAGGGATTTTTAAAATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsP | Campylobacter jejuni subsp. jejuni 81-176 |
57.921 |
100 |
0.591 |