Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   JL105_RS06450 Genome accession   NZ_CP068564
Coordinates   1296096..1297892 (-) Length   598 a.a.
NCBI ID   WP_132028767.1    Uniprot ID   A0A4R3KSP3
Organism   Keratinibaculum paraultunense strain KD-1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1291096..1302892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JL105_RS06435 (JL105_06435) - 1292923..1293936 (-) 1014 WP_132028775.1 aldo/keto reductase -
  JL105_RS06440 (JL105_06440) - 1294153..1294521 (-) 369 WP_132028772.1 DUF6483 family protein -
  JL105_RS06445 (JL105_06445) - 1294843..1295784 (+) 942 WP_158280046.1 DUF4885 family protein -
  JL105_RS06450 (JL105_06450) rcrQ 1296096..1297892 (-) 1797 WP_132028767.1 ABC transporter ATP-binding protein Regulator
  JL105_RS06455 (JL105_06455) - 1297889..1300138 (-) 2250 WP_132028764.1 ABC transporter transmembrane domain-containing protein -
  JL105_RS06460 (JL105_06460) - 1300164..1300631 (-) 468 WP_132028761.1 MarR family winged helix-turn-helix transcriptional regulator -
  JL105_RS06465 (JL105_06465) - 1300991..1301137 (-) 147 WP_158280044.1 hypothetical protein -
  JL105_RS06470 (JL105_06470) - 1301230..1301454 (-) 225 WP_202690444.1 hypothetical protein -
  JL105_RS06475 (JL105_06475) - 1301820..1302269 (-) 450 WP_132028755.1 hypothetical protein -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 67104.98 Da        Isoelectric Point: 7.4471

>NTDB_id=529514 JL105_RS06450 WP_132028767.1 1296096..1297892(-) (rcrQ) [Keratinibaculum paraultunense strain KD-1]
MSKGRRFEKPKDFKGTFSKLLDYLSPYKVKLIIVIVFAIGSTIFSIVGPKVLGKATTKIFEGLISKISGGPGIDFSYIKR
ILLILLGLYGLSSLFSYIQGFIVSGVAQKVSYNLRKEISQKINRLPLKYFDSVPYGEVLSRITNDVDTVSQSLNQSMSQI
ITSATTFIGVLIMMLSISWQMTIVALLILPISAFLIMTVVKRSQKYFREQQKFLGQVNGHIEEVYAGQNIVKAFNAEDQV
ISEFEDINQKLYGSAWKSQFISGMMMPIMSFVGNLGYVGVSILGGWLTIRNVIEVGDILSFIQYIRSFTQPITQVAQISN
VLQSTIAAAERVFEFLEEEEEVEDTKTPVKLEDIKGRVTFENVKFGYDEDKLIIKNFTQDIEPGQMVAIVGPTGAGKTTI
VKLLMRFYDLNGGRILLDGIDIRDFSREDLRKNFGMVLQDTWLFNGTIMDNIRYGRLDATDEEVIEAAKMAHAHRFIMTL
PDGYNMVINEEASNISQGQKQLLTIARAILSNPKVLILDEATSSVDTRTELLIQKAMNNLMKGRTSFVIAHRLSTIRNAD
LILVMKDGDIVEKGTHEELLAKGGFYYTLYNSQFESVS

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=529514 JL105_RS06450 WP_132028767.1 1296096..1297892(-) (rcrQ) [Keratinibaculum paraultunense strain KD-1]
ATGAGTAAAGGTAGAAGATTTGAAAAACCAAAGGATTTTAAAGGAACTTTCTCTAAGTTGCTTGACTATCTAAGTCCATA
TAAAGTTAAACTTATTATAGTTATAGTATTTGCTATTGGAAGCACTATATTTTCAATAGTAGGCCCTAAAGTACTTGGGA
AAGCAACAACAAAGATATTTGAAGGATTGATATCCAAAATATCTGGAGGACCAGGAATTGATTTTAGCTATATAAAAAGA
ATATTGTTGATTTTATTAGGATTATATGGTCTATCCTCCTTGTTTTCCTATATACAAGGATTTATAGTTAGTGGTGTAGC
ACAAAAAGTTTCTTATAACTTAAGGAAGGAAATTTCACAAAAGATAAATAGATTGCCTTTAAAGTATTTTGACTCAGTTC
CCTATGGGGAAGTATTATCAAGGATTACCAATGATGTAGATACGGTAAGTCAATCTTTAAATCAAAGCATGAGTCAAATA
ATAACATCTGCCACTACTTTTATAGGGGTGCTTATAATGATGCTATCCATATCTTGGCAGATGACCATTGTAGCTTTATT
GATTTTACCTATTTCAGCTTTTTTGATTATGACTGTGGTAAAAAGATCTCAAAAATATTTTAGAGAGCAACAGAAATTTC
TAGGACAGGTAAATGGACATATAGAAGAGGTATATGCAGGACAAAATATAGTAAAGGCATTTAATGCTGAAGATCAGGTA
ATTTCAGAATTTGAAGATATTAACCAAAAGCTATATGGATCAGCTTGGAAATCCCAATTTATTTCAGGAATGATGATGCC
TATAATGAGCTTTGTGGGGAATTTAGGCTATGTTGGAGTTTCTATTTTAGGTGGATGGCTCACCATTAGAAATGTTATAG
AAGTTGGAGACATACTTTCATTTATTCAATATATAAGAAGTTTTACTCAACCTATAACTCAAGTAGCACAGATAAGTAAT
GTGTTACAATCTACTATAGCTGCAGCGGAAAGGGTATTTGAGTTTTTAGAAGAAGAGGAAGAAGTAGAAGATACTAAAAC
CCCTGTAAAATTAGAAGATATAAAGGGAAGAGTAACCTTTGAAAATGTAAAATTTGGATACGATGAAGATAAATTGATAA
TTAAAAATTTTACTCAAGACATAGAACCAGGACAGATGGTAGCCATTGTAGGACCTACAGGAGCAGGAAAGACTACCATA
GTAAAACTTCTAATGAGATTTTATGATTTAAATGGTGGTAGAATACTGTTAGATGGCATAGATATAAGGGATTTTTCAAG
AGAGGATTTGAGGAAAAATTTTGGTATGGTGCTTCAAGATACTTGGTTATTTAATGGCACTATAATGGATAATATAAGAT
ATGGTAGGCTTGATGCTACAGATGAAGAAGTCATAGAAGCAGCTAAAATGGCCCATGCTCATAGATTCATAATGACATTG
CCTGATGGATACAATATGGTTATAAACGAAGAAGCAAGTAATATATCTCAAGGACAGAAGCAGCTACTTACCATAGCAAG
AGCAATACTGTCCAATCCAAAAGTGCTTATATTGGACGAAGCCACATCTTCTGTAGATACTAGAACAGAGTTATTAATAC
AGAAGGCTATGAATAATTTGATGAAAGGAAGAACCTCATTTGTAATAGCCCATAGACTTTCAACCATTAGAAATGCAGAT
TTAATATTGGTGATGAAGGATGGAGATATTGTTGAAAAAGGAACCCACGAGGAACTTTTAGCAAAAGGTGGATTTTATTA
CACCCTATACAATAGTCAATTTGAAAGTGTATCTTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(31-311)

ABC transporter (ABC_tran)

(375-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R3KSP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.772

97.492

0.495