Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   JKJ03_RS08020 Genome accession   NZ_CP068563
Coordinates   1585748..1586527 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain GUMT319     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1580748..1591527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKJ03_RS08000 (JKJ03_08000) trmFO 1581435..1582742 (+) 1308 WP_202735966.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  JKJ03_RS08005 (JKJ03_08005) xerC 1582812..1583729 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  JKJ03_RS08010 (JKJ03_08010) hslV 1583745..1584290 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  JKJ03_RS08015 (JKJ03_08015) hslU 1584307..1585710 (+) 1404 WP_014305002.1 HslU--HslV peptidase ATPase subunit -
  JKJ03_RS08020 (JKJ03_08020) codY 1585748..1586527 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  JKJ03_RS08025 (JKJ03_08025) flgB 1586881..1587270 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  JKJ03_RS08030 (JKJ03_08030) flgC 1587270..1587722 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  JKJ03_RS08035 (JKJ03_08035) fliE 1587733..1588053 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  JKJ03_RS08040 (JKJ03_08040) fliF 1588096..1589706 (+) 1611 WP_202735967.1 flagellar basal-body MS-ring/collar protein FliF -
  JKJ03_RS08045 (JKJ03_08045) fliG 1589719..1590735 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  JKJ03_RS08050 (JKJ03_08050) fliH 1590728..1591483 (+) 756 WP_062623354.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=529460 JKJ03_RS08020 WP_003154263.1 1585748..1586527(+) (codY) [Bacillus velezensis strain GUMT319]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=529460 JKJ03_RS08020 WP_003154263.1 1585748..1586527(+) (codY) [Bacillus velezensis strain GUMT319]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGGGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471