Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   JMW48_RS19720 Genome accession   NZ_CP068556
Coordinates   4127934..4128956 (+) Length   340 a.a.
NCBI ID   WP_330613518.1    Uniprot ID   -
Organism   Clostridioides difficile strain CD1801     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4122934..4133956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW48_RS19380 - 4123601..4123819 (-) 219 WP_235689821.1 hypothetical protein -
  JMW48_RS19385 - 4123824..4124003 (+) 180 WP_235689822.1 hypothetical protein -
  JMW48_RS19390 - 4124077..4124640 (-) 564 WP_235689823.1 hypothetical protein -
  JMW48_RS18845 (JMW48_18845) - 4124994..4126106 (-) 1113 WP_003422798.1 alanine racemase -
  JMW48_RS18850 (JMW48_18850) - 4126440..4126985 (+) 546 WP_044482731.1 dihydrofolate reductase family protein -
  JMW48_RS19715 - 4127230..4127970 (+) 741 WP_330613517.1 ABC transporter permease -
  JMW48_RS19720 rcrP 4127934..4128956 (+) 1023 WP_330613518.1 ABC transporter ATP-binding protein Regulator
  JMW48_RS18860 (JMW48_18860) - 4128956..4130746 (+) 1791 WP_003422801.1 ABC transporter ATP-binding protein -
  JMW48_RS18865 (JMW48_18865) - 4130907..4131215 (-) 309 WP_003422803.1 hypothetical protein -
  JMW48_RS18870 (JMW48_18870) - 4131477..4132025 (-) 549 WP_003422804.1 hypothetical protein -
  JMW48_RS18875 (JMW48_18875) - 4132127..4132798 (-) 672 WP_003422805.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 38084.12 Da        Isoelectric Point: 6.7460

>NTDB_id=529330 JMW48_RS19720 WP_330613518.1 4127934..4128956(+) (rcrP) [Clostridioides difficile strain CD1801]
MSITQPAFFLLLNIAVLAVFWISSEKINIGELQVGQLVAFLEYLFHAMFSIMLFSMVFIMYPRAEVSANRIKELLNEEPL
IKNPENGIKENENKGIIEFDNVTFTYPDGEASVLKDISFTAKTGETVAFIGSTGSGKSTLINLIPRFYDVTEGSIKINGV
DIREYDLKALRKKIGFIPQKSLLFTGSIANNIRFGKHKAGESELEYSAKVAQAYEFISKKPRKFDELISEGGANVSGGQK
QRLSIARAIIRRPEIYIFDDSFSALDFKTDAILRAKLKKETKDAIVLIVAQRISSIIDADKIIVLNEGQVVGMGTHKELL
KNCEIYYEIATSQLKKEELE

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=529330 JMW48_RS19720 WP_330613518.1 4127934..4128956(+) (rcrP) [Clostridioides difficile strain CD1801]
ATGTCAATTACTCAACCAGCATTCTTTTTACTATTAAACATAGCTGTTTTAGCTGTATTTTGGATTTCAAGTGAGAAGAT
AAACATTGGAGAACTTCAAGTTGGACAGTTGGTTGCATTTTTGGAATATCTTTTCCATGCCATGTTTTCAATTATGCTTT
TTTCAATGGTATTTATTATGTATCCAAGAGCAGAGGTATCTGCAAATAGAATAAAAGAACTTTTAAATGAAGAACCATTA
ATAAAAAATCCTGAAAATGGAATTAAGGAGAATGAAAATAAGGGTATCATAGAATTTGATAATGTAACTTTTACCTATCC
AGATGGAGAAGCTTCTGTACTTAAGGATATTTCATTTACTGCAAAAACAGGTGAAACAGTTGCTTTTATAGGAAGTACTG
GTAGTGGGAAAAGTACTCTAATTAACTTGATACCTAGATTTTACGATGTAACAGAAGGTAGCATTAAGATAAATGGAGTA
GATATAAGAGAATATGATTTAAAAGCTTTAAGAAAAAAGATAGGATTCATACCTCAAAAATCACTGCTTTTTACTGGTAG
CATAGCAAATAATATTAGATTTGGGAAACATAAGGCAGGAGAGTCAGAATTAGAATATTCCGCAAAAGTTGCACAAGCAT
ATGAGTTTATATCAAAAAAACCTAGAAAGTTTGATGAATTGATTAGTGAAGGTGGAGCAAATGTATCAGGAGGTCAAAAA
CAAAGACTTTCTATTGCAAGGGCTATTATAAGAAGACCTGAAATATATATTTTTGATGATAGTTTTTCTGCACTTGACTT
TAAAACTGATGCAATACTTCGTGCTAAACTGAAGAAGGAAACAAAAGATGCAATTGTATTGATTGTCGCTCAGAGAATTA
GTTCTATTATTGATGCTGATAAGATTATAGTACTCAATGAAGGACAAGTTGTCGGAATGGGAACTCATAAAGAATTATTA
AAAAACTGTGAAATATACTATGAAATTGCAACATCTCAGTTAAAAAAGGAGGAATTAGAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(114-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

47.222

100

0.5