Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   K3B00_RS06335 Genome accession   NZ_CP082789
Coordinates   1287218..1287991 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain HL24830     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1282218..1292991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3B00_RS06315 (K3B00_001258) trmFO 1282562..1283869 (+) 1308 WP_000195258.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  K3B00_RS06320 (K3B00_001259) xerC 1284286..1285182 (+) 897 WP_001015597.1 tyrosine recombinase XerC -
  K3B00_RS06325 (K3B00_001260) hslV 1285179..1285724 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  K3B00_RS06330 (K3B00_001261) hslU 1285790..1287193 (+) 1404 WP_221556217.1 ATP-dependent protease ATPase subunit HslU -
  K3B00_RS06335 (K3B00_001262) codY 1287218..1287991 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  K3B00_RS06340 (K3B00_001263) - 1288042..1288134 (+) 93 WP_031788481.1 hypothetical protein -
  K3B00_RS06345 (K3B00_001264) rpsB 1288333..1289100 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  K3B00_RS06350 (K3B00_001265) - 1289134..1289247 (+) 114 WP_001789890.1 hypothetical protein -
  K3B00_RS06355 (K3B00_001266) tsf 1289282..1290163 (+) 882 WP_223065259.1 translation elongation factor Ts -
  K3B00_RS06360 (K3B00_001267) pyrH 1290300..1291022 (+) 723 WP_000057330.1 UMP kinase -
  K3B00_RS06365 (K3B00_001268) frr 1291041..1291595 (+) 555 WP_001280006.1 ribosome recycling factor -
  K3B00_RS06370 (K3B00_001269) - 1291968..1292738 (+) 771 WP_000473699.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=529323 K3B00_RS06335 WP_000055337.1 1287218..1287991(+) (codY) [Staphylococcus aureus strain HL24830]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=529323 K3B00_RS06335 WP_000055337.1 1287218..1287991(+) (codY) [Staphylococcus aureus strain HL24830]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGATAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTAGGCGGTACGGAAGGTCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428