Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   JSY00_RS05215 Genome accession   NZ_CP082778
Coordinates   1041677..1043413 (-) Length   578 a.a.
NCBI ID   WP_202847689.1    Uniprot ID   -
Organism   Streptococcus suis strain ID32098     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1036677..1048413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JSY00_RS05200 (JSY00_05200) - 1037528..1038814 (-) 1287 WP_002940676.1 homoserine dehydrogenase -
  JSY00_RS05205 (JSY00_05205) - 1038919..1039842 (+) 924 WP_044679604.1 polysaccharide deacetylase family protein -
  JSY00_RS05210 (JSY00_05210) rcrQ 1039899..1041668 (-) 1770 WP_202847690.1 ABC transporter ATP-binding protein Regulator
  JSY00_RS05215 (JSY00_05215) rcrP 1041677..1043413 (-) 1737 WP_202847689.1 ABC transporter ATP-binding protein Regulator
  JSY00_RS05220 (JSY00_05220) - 1043607..1043849 (-) 243 WP_002940680.1 KH domain-containing protein -
  JSY00_RS05225 (JSY00_05225) rpsP 1043871..1044143 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  JSY00_RS05230 (JSY00_05230) - 1044272..1044655 (-) 384 WP_202847688.1 SgcJ/EcaC family oxidoreductase -
  JSY00_RS05235 (JSY00_05235) - 1044668..1044976 (-) 309 WP_202847687.1 DUF4298 domain-containing protein -
  JSY00_RS05240 (JSY00_05240) pcp 1044976..1045623 (-) 648 WP_204108393.1 pyroglutamyl-peptidase I -
  JSY00_RS05245 (JSY00_05245) - 1045598..1046386 (-) 789 WP_202847721.1 class I SAM-dependent methyltransferase -
  JSY00_RS05250 (JSY00_05250) - 1046661..1046858 (-) 198 WP_202847685.1 hypothetical protein -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65211.50 Da        Isoelectric Point: 5.1965

>NTDB_id=529136 JSY00_RS05215 WP_202847689.1 1041677..1043413(-) (rcrP) [Streptococcus suis strain ID32098]
MRLIWTYLKKYPKWIALDLFGAFLFIVVNLGLPTFLARMIDQGITKNNVDQLYFWAGMMGLIVLLGIIGRVTLAYAAGQL
TTNIVKDIRNDLYEKIQDYSHHEYEQIGVSSLVARMTNDAFVLMQFAEMVLKLGIITPLMMVASVIMTLVTSPSLAWTVA
VAMPFLVFVIFYVATKTRPLSEKQQKRLDTINQYVRENLMGLRVIRAFTREDFQEERFAEVNEEYTETSKKLFNLTGLTE
PLFVQIIIAMIVAIVWFALPPLKDGSLQIGDLVAFIEYSFHALFSFLLFANLFNMYPRMSVSSQRIQEVLDMPISISKNE
DGITETDTRGYLEFENVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRILVDGVDVRR
YNLKALRSKIGFIPQKALLFTGTIAENLKYGKMDASLAELHDATDVAQAKEFIESKEEKFDTHLAEGGSNLSGGQKQRLS
IARAIVKQPDIYIFDDSFSALDYKTDAILRSRLKEVTENATVLIVAQRVGTIMDADQIIVLNEGEIVGRGTHNELMESNE
IYREIANSQLNRQSLTEE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=529136 JSY00_RS05215 WP_202847689.1 1041677..1043413(-) (rcrP) [Streptococcus suis strain ID32098]
ATGCGACTGATTTGGACTTATTTGAAAAAATACCCCAAGTGGATTGCTTTAGACTTGTTCGGAGCTTTCCTATTCATTGT
AGTTAACTTGGGCTTGCCAACATTTTTGGCAAGAATGATTGACCAAGGGATTACAAAAAACAATGTTGATCAATTATATT
TCTGGGCAGGCATGATGGGTTTGATTGTTTTGCTCGGTATTATTGGACGAGTGACACTTGCCTATGCGGCTGGACAGTTG
ACAACCAATATCGTCAAGGATATTCGGAATGATTTGTATGAGAAAATTCAGGACTATTCTCATCATGAATATGAGCAAAT
TGGCGTTTCTTCTCTTGTGGCTCGTATGACCAACGATGCTTTTGTCTTGATGCAGTTTGCGGAGATGGTATTGAAACTGG
GAATTATCACACCTTTGATGATGGTGGCCTCGGTCATCATGACCTTGGTAACCAGTCCGAGCTTGGCCTGGACAGTAGCA
GTAGCTATGCCGTTTCTAGTTTTTGTTATTTTCTATGTAGCTACTAAAACTCGTCCACTTTCTGAAAAACAACAGAAACG
ATTGGACACCATTAACCAGTATGTTCGTGAAAATCTCATGGGCTTGCGGGTCATTCGTGCCTTTACGCGTGAAGATTTTC
AAGAAGAGCGTTTTGCAGAGGTCAATGAAGAATATACTGAAACATCCAAAAAACTCTTTAACCTGACTGGTCTGACAGAG
CCGCTCTTTGTCCAGATTATCATTGCTATGATTGTGGCCATTGTCTGGTTTGCCCTGCCTCCTTTGAAAGATGGCAGTTT
GCAAATTGGTGATTTGGTAGCCTTTATCGAATATAGTTTCCACGCCCTATTCTCATTCTTGCTCTTTGCTAACTTGTTTA
ACATGTATCCGCGTATGTCGGTGTCTAGTCAGCGAATTCAAGAAGTCTTGGACATGCCTATCTCTATTTCTAAGAATGAG
GACGGTATTACTGAAACAGATACTCGTGGCTATTTGGAATTTGAAAATGTAACTTTTGCCTATCCTGGTGAAACGGAGTC
GCCTGTATTGCACAATATTTCCTTCAAAGCTAAGCCTGGTGAAACCATTGCCTTTATTGGTTCAACAGGTTCTGGTAAGT
CTTCCTTGGTCAACTTGATTCCACGTTTCTATGATGTGACACTTGGTCGTATCTTGGTGGACGGTGTGGATGTCAGACGC
TACAATCTAAAGGCACTCCGCAGCAAGATTGGCTTTATTCCGCAGAAAGCTCTGCTATTTACCGGAACTATCGCGGAAAA
CTTAAAGTACGGTAAGATGGATGCTAGTCTTGCTGAACTTCATGATGCGACGGATGTGGCTCAGGCTAAGGAGTTTATCG
AGAGTAAGGAAGAAAAATTCGACACCCATCTAGCAGAAGGCGGAAGCAACCTGTCAGGCGGGCAAAAACAACGTTTGTCC
ATTGCGCGTGCCATTGTCAAACAGCCGGATATCTATATCTTTGATGATTCTTTCTCAGCCTTGGATTATAAGACGGATGC
GATTTTGAGAAGTCGTTTGAAGGAAGTGACAGAAAATGCGACGGTGCTGATTGTTGCCCAACGTGTCGGAACCATTATGG
ATGCTGACCAGATTATCGTGCTGAACGAAGGTGAAATTGTCGGTCGTGGCACCCACAATGAATTGATGGAAAGCAATGAG
ATTTACCGAGAAATTGCCAACTCTCAACTTAACCGTCAATCGTTAACAGAAGAATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-280)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.704

100

0.403