Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   JKL50_RS04640 Genome accession   NZ_CP068389
Coordinates   869030..869809 (-) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus altitudinis strain ws31     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 864030..874809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKL50_RS04610 (JKL50_04610) fliH 864143..864907 (-) 765 WP_048002828.1 flagellar assembly protein FliH -
  JKL50_RS04615 (JKL50_04615) fliG 864900..865916 (-) 1017 WP_017367244.1 flagellar motor switch protein FliG -
  JKL50_RS04620 (JKL50_04620) fliF 865928..867520 (-) 1593 WP_202734498.1 flagellar basal-body MS-ring/collar protein FliF -
  JKL50_RS04625 (JKL50_04625) fliE 867571..867888 (-) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  JKL50_RS04630 (JKL50_04630) flgC 867900..868352 (-) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  JKL50_RS04635 (JKL50_04635) flgB 868352..868741 (-) 390 WP_202734499.1 flagellar basal body rod protein FlgB -
  JKL50_RS04640 (JKL50_04640) codY 869030..869809 (-) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  JKL50_RS04645 (JKL50_04645) hslU 869844..871244 (-) 1401 WP_202734500.1 HslU--HslV peptidase ATPase subunit -
  JKL50_RS04650 (JKL50_04650) hslV 871261..871806 (-) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  JKL50_RS04655 (JKL50_04655) xerC 871821..872738 (-) 918 WP_007499616.1 tyrosine recombinase XerC -
  JKL50_RS04660 (JKL50_04660) trmFO 872801..874105 (-) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=528816 JKL50_RS04640 WP_007499612.1 869030..869809(-) (codY) [Bacillus altitudinis strain ws31]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=528816 JKL50_RS04640 WP_007499612.1 869030..869809(-) (codY) [Bacillus altitudinis strain ws31]
ATGGCGTTACTACAAAAAACAAGAATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAACCGGTTAATTTTAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCTATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCCGGTTTGACAACGATTGTGCCAATTATCGGAGGCGGAGACCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCAATCAGCTCTCTTTCATATAGTGAGCTTGAAGCGAT
TGAGCATATCTTTGAAGAACTTGATGGAAATGAAGGGCTGCTTGTCGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATCAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471