Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   JG553_RS04895 Genome accession   NZ_CP068247
Coordinates   1022266..1022565 (-) Length   99 a.a.
NCBI ID   WP_000844413.1    Uniprot ID   X5E258
Organism   Staphylococcus sp. T93     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1017266..1027565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JG553_RS04870 (JG553_04870) gcvPA 1018478..1019824 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  JG553_RS04875 (JG553_04875) gcvT 1019844..1020935 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  JG553_RS04880 (JG553_04880) - 1021094..1021618 (-) 525 WP_001015117.1 shikimate kinase -
  JG553_RS04885 (JG553_04885) - 1021608..1021754 (-) 147 WP_001789879.1 hypothetical protein -
  JG553_RS04890 (JG553_04890) comGF 1021851..1022348 (-) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  JG553_RS04895 (JG553_04895) comGE 1022266..1022565 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  JG553_RS04900 (JG553_04900) comGD 1022552..1022998 (-) 447 WP_001790850.1 competence type IV pilus minor pilin ComGD Machinery gene
  JG553_RS04905 (JG553_04905) comGC 1022976..1023287 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  JG553_RS04910 (JG553_04910) comGB 1023301..1024371 (-) 1071 Protein_970 competence type IV pilus assembly protein ComGB -
  JG553_RS04915 (JG553_04915) comGA 1024343..1025317 (-) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  JG553_RS04920 (JG553_04920) - 1025369..1025992 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  JG553_RS04925 (JG553_04925) - 1025989..1026318 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  JG553_RS04930 (JG553_04930) - 1026318..1027304 (-) 987 WP_000161314.1 ROK family glucokinase -
  JG553_RS04935 (JG553_04935) - 1027301..1027504 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11093.20 Da        Isoelectric Point: 9.9215

>NTDB_id=528558 JG553_RS04895 WP_000844413.1 1022266..1022565(-) (comGE) [Staphylococcus sp. T93]
MKSYKCKGSFLIDSMAGFLLIGLITLLLIPMMNQMQASINHKLQTIDASKVILTTVSKINKEELKKGVTIGKYDIKQSDQ
QICAISKNTTSYQKTCIQY

Nucleotide


Download         Length: 300 bp        

>NTDB_id=528558 JG553_RS04895 WP_000844413.1 1022266..1022565(-) (comGE) [Staphylococcus sp. T93]
ATGAAAAGCTATAAGTGTAAAGGTTCATTCTTAATAGATAGTATGGCTGGATTTTTGCTAATTGGATTGATTACATTACT
ATTGATACCAATGATGAATCAAATGCAAGCGAGTATAAACCATAAACTACAAACAATTGATGCTTCTAAAGTAATTTTGA
CGACTGTATCTAAAATTAATAAAGAAGAACTTAAGAAGGGGGTAACTATAGGGAAGTATGATATTAAGCAAAGTGACCAA
CAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X5E258

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Staphylococcus aureus MW2

86.842

100

1
  comGE Staphylococcus aureus N315

98.99

100

0.99