Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   JG554_RS06145 Genome accession   NZ_CP068241
Coordinates   1290508..1292895 (+) Length   795 a.a.
NCBI ID   WP_070039409.1    Uniprot ID   -
Organism   Staphylococcus sp. 11-B-312     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1285508..1297895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JG554_RS06125 (JG554_06125) sal 1285684..1287315 (+) 1632 WP_081338796.1 Sal family ABC-F type ribosomal protection protein -
  JG554_RS06130 (JG554_06130) - 1287376..1288518 (+) 1143 WP_046208104.1 cysteine desulfurase family protein -
  JG554_RS06135 (JG554_06135) mnmA 1288519..1289631 (+) 1113 WP_046208105.1 tRNA 2-thiouridine(34) synthase MnmA -
  JG554_RS06140 (JG554_06140) - 1289838..1290503 (+) 666 WP_070039411.1 tetratricopeptide repeat protein -
  JG554_RS06145 (JG554_06145) recD2 1290508..1292895 (+) 2388 WP_070039409.1 ATP-dependent RecD-like DNA helicase Machinery gene
  JG554_RS06150 (JG554_06150) alaS 1293195..1295825 (+) 2631 WP_070039408.1 alanine--tRNA ligase -
  JG554_RS06155 (JG554_06155) - 1295893..1296153 (+) 261 WP_046208109.1 IreB family regulatory phosphoprotein -
  JG554_RS06160 (JG554_06160) ruvX 1296157..1296585 (+) 429 WP_019469412.1 Holliday junction resolvase RuvX -
  JG554_RS06165 (JG554_06165) - 1296602..1296928 (+) 327 WP_046208110.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 795 a.a.        Molecular weight: 89636.17 Da        Isoelectric Point: 4.5585

>NTDB_id=528487 JG554_RS06145 WP_070039409.1 1290508..1292895(+) (recD2) [Staphylococcus sp. 11-B-312]
MDNPTLFNNSMIKGTVDAILFQNKDNFYTVLKVDTIESNEDFDSMPTVVGFFPEIAEGDVYTFKGQVVSHPKYGKQLKAE
TFEKELPQTKEAIISYLSSDLFKGIGKKTAQNIVNTLGENAISDILNDPSVLEKVPSLPGKKQKQIAEQIASNQETEQII
IRLHDLGFGPKLAMAIYQVYLGDTLNIVENKPYQLVYDVKGIGFNKADTLARNVGIQFNDDERLKAGLLYVLEEECIKQG
HTYLPTQNVLEMTQDMLSQSPNEVIELQQLENMIQILVEDTKLVKQEHELAIPSLYYSELKSVQNLYRNYTYTNKLKEIE
QSELLLEIGEIEQRNQVTYANSQRDALQTAINSKVMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYQNDDYPVVLA
APTGRASKRLAESTGLEAMTIHRLIGWNQDTQPEDILDNEISAKLIIIDEMSMVDTWLFHQFLSAVPIDAQVILVGDEDQ
LPSVGPGQVFKDLIDSKVIPRVNLTEVYRQQDGSSIIELAHRMKLGEPIDITQRFHDRNFINCSTEQIPSVVEKVVSSAV
KKGYDMSDIQVLAPMYKGSAGIKKLNAVLQTILNPKEKDTREIEFGDVVFRKGDKVLQLVNRPSDNIFNGDIGVIVGIFW
AKENALNKDVLVVDFDGNEITFVRQDLLELTHAYCTSIHKSQGSEFPIVIMPMVKQYFRMLQKPILYTGLTRAKQSLVFL
GDPQAFEIGLNTHGQVRMTQLCSFLKTYFNNDDRKDEVAVEDTFDATTILTEENIYKINPMINMGDISPYDFVEH

Nucleotide


Download         Length: 2388 bp        

>NTDB_id=528487 JG554_RS06145 WP_070039409.1 1290508..1292895(+) (recD2) [Staphylococcus sp. 11-B-312]
GTGGACAACCCTACATTATTCAATAATTCAATGATTAAAGGTACTGTAGATGCTATCTTGTTTCAAAACAAAGACAATTT
TTATACTGTTTTAAAAGTAGATACGATAGAATCTAATGAAGATTTTGATTCTATGCCTACAGTTGTAGGGTTCTTTCCAG
AAATTGCTGAAGGCGATGTTTATACTTTTAAAGGTCAAGTCGTTTCACATCCTAAATATGGTAAACAGTTAAAAGCTGAA
ACGTTTGAAAAAGAGCTGCCTCAAACCAAAGAGGCTATTATTAGCTATTTATCTAGTGATTTATTTAAAGGAATAGGTAA
AAAAACAGCTCAAAATATTGTGAATACACTTGGAGAAAATGCTATTTCAGACATTTTAAATGATCCATCTGTTTTAGAAA
AAGTACCTAGTTTACCTGGGAAAAAACAAAAGCAAATTGCTGAACAAATTGCGAGTAATCAAGAAACAGAACAAATTATT
ATTCGATTACATGATTTAGGATTTGGGCCTAAACTCGCTATGGCAATCTATCAGGTTTATTTAGGTGATACACTTAATAT
TGTAGAAAATAAACCCTATCAATTAGTTTACGACGTGAAAGGAATCGGTTTTAACAAAGCGGATACTTTAGCACGAAATG
TGGGTATTCAATTTAATGATGATGAGCGTTTAAAAGCGGGTTTATTATATGTATTAGAAGAAGAATGTATTAAGCAAGGG
CATACATACTTACCAACACAAAATGTATTAGAAATGACACAAGATATGTTATCACAATCACCAAATGAAGTGATTGAACT
TCAACAATTAGAAAATATGATTCAAATCTTAGTTGAAGATACCAAATTAGTAAAACAGGAACACGAATTAGCAATTCCTA
GTTTATACTATTCGGAACTTAAAAGTGTTCAAAACTTATATCGTAATTACACCTATACGAATAAATTAAAAGAAATTGAG
CAGTCTGAATTATTATTAGAAATTGGTGAAATCGAACAACGCAATCAAGTCACTTATGCTAATTCCCAAAGAGATGCGCT
ACAGACTGCAATCAATAGTAAAGTTATGCTGCTAACTGGCGGGCCAGGAACAGGAAAAACTACTGTGATTAAAGGTATTG
TCGAATTATATGCAGAAATACATGGTTTATCTTTAGATTATGATGATTATCAAAACGATGATTATCCAGTTGTATTAGCA
GCACCTACAGGTAGAGCTTCAAAACGATTGGCTGAATCTACAGGGTTGGAAGCTATGACTATACATCGATTGATAGGTTG
GAATCAAGATACACAGCCAGAAGATATTTTAGATAATGAGATTTCAGCTAAACTAATCATTATTGATGAAATGTCAATGG
TCGACACCTGGCTGTTTCATCAATTTCTTAGCGCGGTACCTATTGATGCCCAAGTGATATTAGTAGGTGATGAAGATCAG
TTGCCTTCCGTAGGCCCAGGACAAGTGTTTAAAGATCTCATTGATTCTAAAGTTATACCTAGAGTGAATCTGACTGAAGT
TTACCGACAACAAGATGGGTCTAGTATCATAGAATTAGCGCATAGAATGAAATTGGGAGAACCGATTGATATCACACAAA
GATTTCATGATCGTAACTTTATTAATTGTTCAACTGAACAAATACCTTCTGTTGTTGAAAAGGTTGTTTCAAGTGCTGTT
AAAAAAGGTTATGATATGAGTGATATACAAGTATTAGCCCCTATGTATAAAGGTTCTGCAGGTATAAAAAAATTAAATGC
TGTATTGCAAACAATCTTAAACCCTAAAGAAAAGGATACGCGTGAAATTGAATTCGGTGATGTTGTCTTTAGAAAAGGGG
ATAAGGTGCTACAGCTAGTAAATAGGCCGAGTGATAATATATTTAATGGCGATATTGGTGTGATTGTTGGCATATTTTGG
GCAAAAGAAAACGCCTTAAATAAAGATGTATTGGTCGTTGATTTTGACGGAAATGAAATTACTTTTGTAAGACAAGATTT
GTTAGAATTAACACATGCATATTGTACGTCTATTCACAAATCGCAAGGTTCTGAATTTCCAATTGTAATTATGCCTATGG
TTAAGCAATATTTTAGAATGTTACAAAAACCTATATTATATACAGGATTAACAAGAGCTAAGCAATCACTAGTATTTCTG
GGTGATCCACAAGCTTTTGAAATCGGTTTAAATACACATGGTCAAGTGAGAATGACTCAGCTCTGTTCATTCTTAAAAAC
GTATTTTAATAATGATGATCGTAAAGATGAGGTTGCAGTTGAAGATACGTTTGATGCCACGACTATTTTAACAGAAGAAA
ATATATATAAAATTAATCCTATGATTAATATGGGAGATATTTCGCCATATGATTTTGTTGAACATTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)

AAA domain (AAA_30)

(339-545)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

51.198

99.748

0.511