Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | I6J09_RS10090 | Genome accession | NZ_CP068216 |
| Coordinates | 2107496..2107945 (+) | Length | 149 a.a. |
| NCBI ID | WP_208969801.1 | Uniprot ID | - |
| Organism | Staphylococcus pasteuri strain FDAARGOS_1152 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2097129..2147480 | 2107496..2107945 | within | 0 |
Gene organization within MGE regions
Location: 2097129..2147480
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6J09_RS10000 (I6J09_09995) | whiA | 2097129..2098073 (+) | 945 | WP_208969788.1 | DNA-binding protein WhiA | - |
| I6J09_RS10005 (I6J09_10000) | - | 2098210..2099247 (-) | 1038 | WP_108017228.1 | tyrosine-type recombinase/integrase | - |
| I6J09_RS10010 (I6J09_10005) | - | 2099302..2100093 (-) | 792 | WP_208969789.1 | DUF1828 domain-containing protein | - |
| I6J09_RS10015 (I6J09_10010) | - | 2100098..2100571 (-) | 474 | WP_208969790.1 | DUF6978 family protein | - |
| I6J09_RS10020 (I6J09_10015) | - | 2100605..2100865 (-) | 261 | WP_208969791.1 | helix-turn-helix domain-containing protein | - |
| I6J09_RS10025 (I6J09_10020) | - | 2100999..2101523 (-) | 525 | WP_208969792.1 | hypothetical protein | - |
| I6J09_RS10030 (I6J09_10025) | - | 2101498..2101899 (-) | 402 | WP_208969793.1 | sporulation protein | - |
| I6J09_RS10035 (I6J09_10030) | - | 2103144..2103311 (-) | 168 | WP_208969794.1 | hypothetical protein | - |
| I6J09_RS10040 (I6J09_10035) | - | 2103356..2103436 (-) | 81 | Protein_1942 | transcriptional regulator | - |
| I6J09_RS10045 (I6J09_10040) | - | 2103436..2104074 (-) | 639 | WP_046464317.1 | XRE family transcriptional regulator | - |
| I6J09_RS10050 (I6J09_10045) | - | 2104265..2104525 (+) | 261 | WP_208969795.1 | helix-turn-helix transcriptional regulator | - |
| I6J09_RS10055 (I6J09_10050) | - | 2104539..2105294 (+) | 756 | WP_208969796.1 | phage antirepressor KilAC domain-containing protein | - |
| I6J09_RS10060 (I6J09_10055) | - | 2105615..2105818 (-) | 204 | WP_208969797.1 | hypothetical protein | - |
| I6J09_RS10065 (I6J09_10060) | - | 2105877..2106194 (+) | 318 | WP_126567609.1 | DUF771 domain-containing protein | - |
| I6J09_RS10070 (I6J09_10065) | - | 2106197..2106370 (+) | 174 | WP_208969798.1 | hypothetical protein | - |
| I6J09_RS10075 (I6J09_10070) | - | 2106442..2106669 (+) | 228 | WP_208969799.1 | hypothetical protein | - |
| I6J09_RS10080 (I6J09_10075) | - | 2106641..2106868 (+) | 228 | WP_108017081.1 | DUF2483 family protein | - |
| I6J09_RS10085 (I6J09_10080) | - | 2106861..2107496 (+) | 636 | WP_208969800.1 | ERF family protein | - |
| I6J09_RS10090 (I6J09_10085) | ssbA | 2107496..2107945 (+) | 450 | WP_208969801.1 | single-stranded DNA-binding protein | Machinery gene |
| I6J09_RS10095 (I6J09_10090) | - | 2107957..2108640 (+) | 684 | WP_208969802.1 | putative HNHc nuclease | - |
| I6J09_RS10100 (I6J09_10095) | - | 2108646..2109128 (-) | 483 | WP_208969803.1 | hypothetical protein | - |
| I6J09_RS10105 (I6J09_10100) | - | 2109175..2109405 (+) | 231 | WP_208969804.1 | helix-turn-helix transcriptional regulator | - |
| I6J09_RS10110 (I6J09_10105) | - | 2109408..2110148 (+) | 741 | WP_208970082.1 | helix-turn-helix domain-containing protein | - |
| I6J09_RS10115 (I6J09_10110) | - | 2110161..2110946 (+) | 786 | WP_208969805.1 | ATP-binding protein | - |
| I6J09_RS12555 | - | 2110943..2111101 (+) | 159 | WP_236582534.1 | hypothetical protein | - |
| I6J09_RS10120 (I6J09_10115) | - | 2111113..2111337 (+) | 225 | WP_208969806.1 | DUF3269 family protein | - |
| I6J09_RS10125 (I6J09_10120) | - | 2111347..2111754 (+) | 408 | WP_208969807.1 | RusA family crossover junction endodeoxyribonuclease | - |
| I6J09_RS10130 (I6J09_10125) | - | 2111755..2111913 (+) | 159 | WP_208969808.1 | hypothetical protein | - |
| I6J09_RS10135 (I6J09_10130) | - | 2111925..2112275 (+) | 351 | WP_017636915.1 | helix-turn-helix domain-containing protein | - |
| I6J09_RS10140 (I6J09_10135) | - | 2112277..2112534 (+) | 258 | WP_017636914.1 | hypothetical protein | - |
| I6J09_RS10145 (I6J09_10140) | - | 2112770..2112979 (+) | 210 | Protein_1964 | DUF3310 domain-containing protein | - |
| I6J09_RS10150 (I6J09_10145) | - | 2112981..2113208 (+) | 228 | WP_208969810.1 | hypothetical protein | - |
| I6J09_RS10155 (I6J09_10150) | - | 2113214..2113750 (+) | 537 | WP_208969811.1 | HNH endonuclease signature motif containing protein | - |
| I6J09_RS10160 (I6J09_10155) | - | 2113809..2113991 (+) | 183 | WP_208969812.1 | hypothetical protein | - |
| I6J09_RS10165 (I6J09_10160) | - | 2113981..2114181 (+) | 201 | WP_208970083.1 | hypothetical protein | - |
| I6J09_RS10170 (I6J09_10165) | - | 2114178..2114534 (+) | 357 | WP_017636910.1 | thermonuclease family protein | - |
| I6J09_RS10175 (I6J09_10170) | - | 2114556..2114876 (+) | 321 | WP_017636909.1 | MazG-like family protein | - |
| I6J09_RS10180 (I6J09_10175) | - | 2114913..2115170 (+) | 258 | WP_017636908.1 | hypothetical protein | - |
| I6J09_RS10185 (I6J09_10180) | - | 2115176..2115445 (+) | 270 | WP_208969813.1 | hypothetical protein | - |
| I6J09_RS10190 (I6J09_10185) | - | 2115445..2115591 (+) | 147 | WP_208969814.1 | DUF1381 domain-containing protein | - |
| I6J09_RS10195 (I6J09_10190) | - | 2115588..2115824 (+) | 237 | WP_208969815.1 | hypothetical protein | - |
| I6J09_RS10200 (I6J09_10195) | rinB | 2115817..2115993 (+) | 177 | WP_208969816.1 | transcriptional activator RinB | - |
| I6J09_RS10205 (I6J09_10200) | - | 2115999..2116223 (+) | 225 | WP_200271295.1 | hypothetical protein | - |
| I6J09_RS10210 (I6J09_10205) | - | 2116223..2116426 (+) | 204 | WP_017636904.1 | DUF1514 family protein | - |
| I6J09_RS10215 (I6J09_10210) | - | 2116512..2116886 (+) | 375 | WP_208969817.1 | SA1788 family PVL leukocidin-associated protein | - |
| I6J09_RS10220 (I6J09_10215) | - | 2116995..2117408 (+) | 414 | WP_208969818.1 | hypothetical protein | - |
| I6J09_RS10225 (I6J09_10220) | - | 2117623..2117934 (+) | 312 | WP_154836109.1 | HNH endonuclease | - |
| I6J09_RS10230 (I6J09_10225) | - | 2118075..2118425 (+) | 351 | WP_070653714.1 | hypothetical protein | - |
| I6J09_RS10235 (I6J09_10230) | - | 2118422..2120074 (+) | 1653 | WP_208969819.1 | terminase TerL endonuclease subunit | - |
| I6J09_RS10240 (I6J09_10235) | - | 2120086..2121249 (+) | 1164 | WP_208969820.1 | phage portal protein | - |
| I6J09_RS10245 (I6J09_10240) | - | 2121239..2122009 (+) | 771 | WP_208969821.1 | head maturation protease, ClpP-related | - |
| I6J09_RS10250 (I6J09_10245) | - | 2122027..2123247 (+) | 1221 | WP_029056523.1 | phage major capsid protein | - |
| I6J09_RS10255 (I6J09_10250) | - | 2123260..2123430 (+) | 171 | WP_177244129.1 | hypothetical protein | - |
| I6J09_RS10260 (I6J09_10255) | - | 2123436..2123723 (+) | 288 | WP_208969822.1 | hypothetical protein | - |
| I6J09_RS10265 (I6J09_10260) | - | 2123707..2124057 (+) | 351 | WP_208969823.1 | phage head-tail adapter protein | - |
| I6J09_RS10270 (I6J09_10265) | - | 2124054..2124449 (+) | 396 | WP_208969824.1 | hypothetical protein | - |
| I6J09_RS10275 (I6J09_10270) | - | 2124450..2124854 (+) | 405 | WP_108017056.1 | hypothetical protein | - |
| I6J09_RS10280 (I6J09_10275) | - | 2124919..2125608 (+) | 690 | WP_154836119.1 | major tail protein | - |
| I6J09_RS10285 (I6J09_10280) | gpG | 2125708..2126025 (+) | 318 | WP_029056527.1 | phage tail assembly chaperone G | - |
| I6J09_RS10290 (I6J09_10285) | - | 2126103..2126261 (+) | 159 | WP_002452342.1 | hypothetical protein | - |
| I6J09_RS10295 (I6J09_10290) | - | 2126302..2132139 (+) | 5838 | WP_208969825.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| I6J09_RS10300 (I6J09_10295) | - | 2132143..2133633 (+) | 1491 | WP_208969826.1 | phage distal tail protein | - |
| I6J09_RS10305 (I6J09_10300) | - | 2133646..2137176 (+) | 3531 | WP_208969827.1 | phage tail spike protein | - |
| I6J09_RS10310 (I6J09_10305) | - | 2137166..2137312 (+) | 147 | WP_208969828.1 | hypothetical protein | - |
| I6J09_RS10315 (I6J09_10310) | - | 2137356..2137643 (+) | 288 | WP_017636884.1 | hypothetical protein | - |
| I6J09_RS10320 (I6J09_10315) | - | 2137682..2138098 (+) | 417 | WP_414075515.1 | hypothetical protein | - |
| I6J09_RS10325 (I6J09_10320) | - | 2138085..2138486 (+) | 402 | WP_017636882.1 | hypothetical protein | - |
| I6J09_RS10330 (I6J09_10325) | - | 2138538..2138789 (+) | 252 | WP_017636881.1 | phage holin | - |
| I6J09_RS10335 (I6J09_10330) | - | 2138801..2140213 (+) | 1413 | WP_208969829.1 | N-acetylmuramoyl-L-alanine amidase | - |
| I6J09_RS12605 | - | 2140432..2140563 (+) | 132 | WP_017636879.1 | hypothetical protein | - |
| I6J09_RS10340 (I6J09_10335) | - | 2140753..2140950 (+) | 198 | WP_017636877.1 | hypothetical protein | - |
| I6J09_RS10350 (I6J09_10345) | clpP | 2142384..2142974 (+) | 591 | WP_017636876.1 | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | - |
| I6J09_RS10355 (I6J09_10350) | - | 2143100..2143318 (-) | 219 | WP_119622469.1 | hypothetical protein | - |
| I6J09_RS10360 (I6J09_10355) | - | 2143335..2144234 (-) | 900 | WP_119622470.1 | TIGR01777 family oxidoreductase | - |
| I6J09_RS10365 (I6J09_10360) | - | 2145011..2145706 (+) | 696 | WP_208969830.1 | DUF4887 domain-containing protein | - |
| I6J09_RS10370 (I6J09_10365) | - | 2145814..2146035 (-) | 222 | WP_017636871.1 | hypothetical protein | - |
| I6J09_RS10375 (I6J09_10370) | - | 2146467..2147480 (+) | 1014 | WP_029056541.1 | sugar-binding transcriptional regulator | - |
Sequence
Protein
Download Length: 149 a.a. Molecular weight: 16571.13 Da Isoelectric Point: 4.6838
>NTDB_id=528157 I6J09_RS10090 WP_208969801.1 2107496..2107945(+) (ssbA) [Staphylococcus pasteuri strain FDAARGOS_1152]
MLNRVVLVGRLTKDPEFRTTPNGVNVATFTLAVNRTFTNAQGEREADFINSVTFRKQADNVNNYLSKGSLVGVDGRVQSR
SYENQEGKRVFVTEVVCDSVQFLEPKNNNQSNNQPQQQNGQTQSGNNPFENGMQNANGPIDISDDDLPF
MLNRVVLVGRLTKDPEFRTTPNGVNVATFTLAVNRTFTNAQGEREADFINSVTFRKQADNVNNYLSKGSLVGVDGRVQSR
SYENQEGKRVFVTEVVCDSVQFLEPKNNNQSNNQPQQQNGQTQSGNNPFENGMQNANGPIDISDDDLPF
Nucleotide
Download Length: 450 bp
>NTDB_id=528157 I6J09_RS10090 WP_208969801.1 2107496..2107945(+) (ssbA) [Staphylococcus pasteuri strain FDAARGOS_1152]
ATGTTAAACAGAGTTGTATTAGTAGGAAGATTAACGAAAGACCCGGAATTTAGAACGACACCAAATGGTGTAAATGTTGC
CACTTTCACATTAGCAGTGAATAGAACATTTACAAATGCTCAAGGAGAACGTGAGGCAGATTTTATTAACTCTGTAACTT
TTAGAAAGCAAGCAGACAACGTAAACAACTATTTATCAAAAGGGTCGTTAGTTGGAGTTGATGGACGTGTGCAATCGCGT
AGTTATGAAAATCAAGAGGGCAAACGCGTATTTGTTACTGAGGTAGTTTGTGATAGCGTCCAATTTTTAGAACCGAAGAA
TAATAACCAATCTAACAACCAACCACAACAACAAAACGGACAAACTCAAAGTGGTAATAATCCGTTCGAAAATGGTATGC
AAAACGCTAATGGACCTATAGACATTTCAGATGATGACCTACCTTTCTAG
ATGTTAAACAGAGTTGTATTAGTAGGAAGATTAACGAAAGACCCGGAATTTAGAACGACACCAAATGGTGTAAATGTTGC
CACTTTCACATTAGCAGTGAATAGAACATTTACAAATGCTCAAGGAGAACGTGAGGCAGATTTTATTAACTCTGTAACTT
TTAGAAAGCAAGCAGACAACGTAAACAACTATTTATCAAAAGGGTCGTTAGTTGGAGTTGATGGACGTGTGCAATCGCGT
AGTTATGAAAATCAAGAGGGCAAACGCGTATTTGTTACTGAGGTAGTTTGTGATAGCGTCCAATTTTTAGAACCGAAGAA
TAATAACCAATCTAACAACCAACCACAACAACAAAACGGACAAACTCAAAGTGGTAATAATCCGTTCGAAAATGGTATGC
AAAACGCTAATGGACCTATAGACATTTCAGATGATGACCTACCTTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
59.884 |
100 |
0.691 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.07 |
100 |
0.624 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
60.377 |
71.141 |
0.43 |
| ssb | Glaesserella parasuis strain SC1401 |
32.768 |
100 |
0.389 |
| ssbA | Streptococcus mutans UA159 |
36.242 |
100 |
0.362 |