Detailed information
Bioinformatically predicted
Overview
| Name | rarA | Type | Machinery gene |
| Locus tag | U063_RS06145 | Genome accession | NC_022886 |
| Coordinates | 1253995..1255170 (+) | Length | 391 a.a. |
| NCBI ID | WP_023592419.1 | Uniprot ID | - |
| Organism | Helicobacter pylori BM012A | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1248995..1260170
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| U063_RS06120 (U063_1225) | - | 1249281..1250177 (+) | 897 | WP_000697532.1 | OriC activity response regulator | - |
| U063_RS06125 (U063_1226) | - | 1250403..1251269 (+) | 867 | WP_080261094.1 | 5'-3' exonuclease | - |
| U063_RS06130 (U063_1227) | - | 1251333..1252583 (-) | 1251 | WP_023592416.1 | hypothetical protein | - |
| U063_RS06135 (U063_1228) | - | 1252751..1253617 (+) | 867 | WP_023592417.1 | DnaJ C-terminal domain-containing protein | - |
| U063_RS06140 (U063_1229) | - | 1253627..1253998 (+) | 372 | WP_023592418.1 | heat shock protein transcriptional repressor HspR | - |
| U063_RS06145 (U063_1230) | rarA | 1253995..1255170 (+) | 1176 | WP_023592419.1 | replication-associated recombination protein A | Machinery gene |
| U063_RS06150 (U063_1231) | fur | 1255333..1255785 (+) | 453 | WP_023592420.1 | ferric iron uptake transcriptional regulator | - |
| U063_RS06155 (U063_1232) | - | 1255806..1256303 (-) | 498 | WP_038420134.1 | DUF2147 domain-containing protein | - |
| U063_RS06160 (U063_1233) | - | 1256300..1256836 (-) | 537 | WP_023592422.1 | YhcH/YjgK/YiaL family protein | - |
| U063_RS06165 (U063_1234) | fliY | 1256865..1257728 (-) | 864 | WP_023592423.1 | flagellar motor switch protein FliY | - |
| U063_RS06170 (U063_1235) | fliM | 1257732..1258796 (-) | 1065 | WP_000763562.1 | flagellar motor switch protein FliM | - |
| U063_RS06175 (U063_1236) | - | 1258789..1259556 (-) | 768 | WP_000602430.1 | RNA polymerase sigma factor FliA | - |
| U063_RS06180 (U063_1237) | - | 1259534..1259848 (-) | 315 | WP_000868000.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 391 a.a. Molecular weight: 43809.52 Da Isoelectric Point: 7.7612
>NTDB_id=52808 U063_RS06145 WP_023592419.1 1253995..1255170(+) (rarA) [Helicobacter pylori BM012A]
MSLTSLLNPTSLEDFLGQEHLIGKDAPLFKALKSKHFPHAFFYGPPGVGKTSLAQIIAYMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLIHAIRSRSFIFELTPLKKSDLDKLCAK
ALTLLKKQIEPGAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN
MSLTSLLNPTSLEDFLGQEHLIGKDAPLFKALKSKHFPHAFFYGPPGVGKTSLAQIIAYMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLIHAIRSRSFIFELTPLKKSDLDKLCAK
ALTLLKKQIEPGAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN
Nucleotide
Download Length: 1176 bp
>NTDB_id=52808 U063_RS06145 WP_023592419.1 1253995..1255170(+) (rarA) [Helicobacter pylori BM012A]
ATGAGCCTGACTTCGCTTTTAAACCCCACAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCTTAAAATCCAAACACTTCCCCCACGCCTTTTTCTATGGCCCTCCTGGCGTGGGCAAAACAAGCCTGG
CTCAAATCATCGCCTATATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAGCCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATTTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
TCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTGACCCCCCTAAAAAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTGGCGCTAAAACCTACCTTTTAAACAACAGCGCTGGCGACGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAACCTTACTAGCGCGTTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAATGCTTCCATCTATTATTTGGCGCGCTTGATTGCTGGTGGGGAAAATCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAAGGCTCACTCTACCCTATTCCTAAACACCTATTGCCTAACGCTAA
AGATTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA
ATGAGCCTGACTTCGCTTTTAAACCCCACAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCTTAAAATCCAAACACTTCCCCCACGCCTTTTTCTATGGCCCTCCTGGCGTGGGCAAAACAAGCCTGG
CTCAAATCATCGCCTATATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAGCCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATTTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
TCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTGACCCCCCTAAAAAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTGGCGCTAAAACCTACCTTTTAAACAACAGCGCTGGCGACGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAACCTTACTAGCGCGTTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAATGCTTCCATCTATTATTTGGCGCGCTTGATTGCTGGTGGGGAAAATCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAAGGCTCACTCTACCCTATTCCTAAACACCTATTGCCTAACGCTAA
AGATTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rarA | Bacillus subtilis subsp. subtilis str. 168 |
36.893 |
100 |
0.389 |