Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   I6I50_RS03890 Genome accession   NZ_CP068195
Coordinates   766282..766707 (-) Length   141 a.a.
NCBI ID   WP_201707172.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FDAARGOS_1093     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 761282..771707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I50_RS03860 (I6I50_03860) - 761850..762815 (+) 966 WP_201706844.1 triacylglycerol lipase -
  I6I50_RS03865 (I6I50_03865) - 762989..763960 (+) 972 WP_201706845.1 triacylglycerol lipase -
  I6I50_RS03870 (I6I50_03870) rplS 764019..764393 (-) 375 WP_004691454.1 50S ribosomal protein L19 -
  I6I50_RS03875 (I6I50_03875) trmD 764534..765274 (-) 741 WP_094148539.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  I6I50_RS03880 (I6I50_03880) rimM 765302..765850 (-) 549 WP_004978035.1 ribosome maturation factor RimM -
  I6I50_RS03885 (I6I50_03885) rpsP 765879..766136 (-) 258 WP_004718284.1 30S ribosomal protein S16 -
  I6I50_RS03890 (I6I50_03890) comF 766282..766707 (-) 426 WP_201707172.1 type IV pilin protein Machinery gene
  I6I50_RS03895 (I6I50_03895) - 766707..767222 (-) 516 WP_101495478.1 type IV pilin protein -
  I6I50_RS03900 (I6I50_03900) - 767232..770822 (-) 3591 WP_201706846.1 PilC/PilY family type IV pilus protein -
  I6I50_RS03905 (I6I50_03905) - 770840..771529 (-) 690 WP_201706847.1 pilus assembly protein PilX -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15487.62 Da        Isoelectric Point: 8.9581

>NTDB_id=527927 I6I50_RS03890 WP_201707172.1 766282..766707(-) (comF) [Acinetobacter johnsonii strain FDAARGOS_1093]
MNKNLGFTLIELMIVVAIIAILAAIAYPSYTQYKIRTNRVDVQSEMMNIAQRLQSYHVINHNYTNATLDNSNLSKDYPAS
NAVYTITLTPSVQSWVLVAEPKSATIQSANGNVILNSQGQKCWTKGASTCALSGTSNWDGR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=527927 I6I50_RS03890 WP_201707172.1 766282..766707(-) (comF) [Acinetobacter johnsonii strain FDAARGOS_1093]
ATGAATAAGAATTTAGGCTTCACGCTGATTGAATTGATGATTGTAGTGGCAATTATTGCCATTTTGGCAGCGATAGCCTA
TCCATCATATACGCAGTATAAAATTCGCACTAATCGTGTAGATGTACAAAGTGAAATGATGAATATAGCCCAGCGTTTAC
AGAGTTATCATGTCATTAATCATAATTATACCAATGCAACATTAGATAATAGTAATTTAAGTAAAGATTATCCGGCGTCT
AATGCTGTATATACCATCACACTTACACCCAGTGTACAATCATGGGTATTAGTAGCTGAACCTAAATCAGCCACTATTCA
ATCAGCCAATGGAAATGTAATTTTAAATAGCCAGGGTCAAAAATGCTGGACCAAAGGTGCATCGACTTGTGCCCTAAGTG
GCACATCCAACTGGGACGGCAGATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

54.861

100

0.56
  pilE Acinetobacter baumannii D1279779

53.676

96.454

0.518