Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   I6I51_RS10065 Genome accession   NZ_CP068187
Coordinates   1919122..1919520 (-) Length   132 a.a.
NCBI ID   WP_201701734.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FDAARGOS_1094     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1914122..1924520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I51_RS10035 (I6I51_10040) - 1914696..1915661 (+) 966 WP_201701728.1 triacylglycerol lipase -
  I6I51_RS10040 (I6I51_10045) - 1915835..1916806 (+) 972 WP_058870393.1 triacylglycerol lipase -
  I6I51_RS10045 (I6I51_10050) rplS 1916868..1917242 (-) 375 WP_004691454.1 50S ribosomal protein L19 -
  I6I51_RS10050 (I6I51_10055) trmD 1917383..1918123 (-) 741 WP_005401335.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  I6I51_RS10055 (I6I51_10060) rimM 1918151..1918699 (-) 549 WP_201701730.1 ribosome maturation factor RimM -
  I6I51_RS10060 (I6I51_10065) rpsP 1918710..1918976 (-) 267 WP_201701732.1 30S ribosomal protein S16 -
  I6I51_RS10065 (I6I51_10070) comF 1919122..1919520 (-) 399 WP_201701734.1 type IV pilin protein Machinery gene
  I6I51_RS10070 (I6I51_10075) - 1919520..1920023 (-) 504 WP_333642433.1 pili assembly chaperone -
  I6I51_RS10075 (I6I51_10080) - 1920186..1924478 (-) 4293 WP_201701736.1 pilus assembly protein PilC -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14611.68 Da        Isoelectric Point: 8.4445

>NTDB_id=527897 I6I51_RS10065 WP_201701734.1 1919122..1919520(-) (comF) [Acinetobacter johnsonii strain FDAARGOS_1094]
MKQQQAFTLIELMIVVAIIAVLAAIAYPSYQEYIKRTHRADMQSEMMQQAQQLQSYYVIKHHYTDAALSYVGNERYALAL
TAQSAQTWTMTATPKAAQAGDGVILLNSQGQKCWTKGASTCALSGTSNWDGR

Nucleotide


Download         Length: 399 bp        

>NTDB_id=527897 I6I51_RS10065 WP_201701734.1 1919122..1919520(-) (comF) [Acinetobacter johnsonii strain FDAARGOS_1094]
ATGAAACAACAACAAGCATTTACCCTCATTGAGCTGATGATTGTGGTGGCCATTATTGCTGTTTTGGCTGCGATTGCTTA
CCCAAGCTATCAAGAATATATCAAACGTACTCACCGCGCCGATATGCAAAGTGAAATGATGCAACAAGCACAGCAGTTAC
AAAGTTATTATGTGATTAAGCATCATTATACGGATGCAGCGTTGAGTTATGTTGGCAATGAGCGTTATGCCCTTGCATTA
ACAGCGCAAAGCGCACAAACGTGGACAATGACTGCTACCCCAAAAGCGGCTCAAGCTGGTGATGGCGTGATTTTACTCAA
TAGCCAAGGGCAAAAATGCTGGACCAAAGGTGCATCGACTTGTGCCCTAAGTGGCACATCCAACTGGGACGGCAGATAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

50.694

100

0.553
  pilE Acinetobacter baumannii D1279779

50

100

0.523