Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   U063_RS00970 Genome accession   NC_022886
Coordinates   193682..194455 (-) Length   257 a.a.
NCBI ID   WP_023591604.1    Uniprot ID   -
Organism   Helicobacter pylori BM012A     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 188682..199455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U063_RS00935 (U063_0186) - 188905..190065 (+) 1161 WP_023591599.1 HP1165 family MFS efflux transporter -
  U063_RS00940 (U063_0187) - 190072..191046 (-) 975 WP_023591600.1 NAD(P)-binding domain-containing protein -
  U063_RS00945 (U063_0188) ccoS 191072..191263 (-) 192 WP_001090949.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  U063_RS00950 (U063_0189) - 191388..191969 (+) 582 WP_023591601.1 DedA family protein -
  U063_RS00955 (U063_0190) - 192061..192555 (+) 495 WP_000516071.1 flavodoxin -
  U063_RS00960 (U063_0191) ybeY 192608..193030 (+) 423 WP_023591602.1 rRNA maturation RNase YbeY -
  U063_RS00965 (U063_0192) fic 193122..193655 (-) 534 WP_023591603.1 protein adenylyltransferase Fic -
  U063_RS00970 (U063_0193) proC 193682..194455 (-) 774 WP_023591604.1 pyrroline-5-carboxylate reductase Machinery gene
  U063_RS00975 (U063_0194) hopL 194469..198173 (-) 3705 WP_041200995.1 Hop family outer membrane protein HopL -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28183.85 Da        Isoelectric Point: 8.3337

>NTDB_id=52788 U063_RS00970 WP_023591604.1 193682..194455(-) (proC) [Helicobacter pylori BM012A]
MEILQFIGYGNMVQAILEGAHEILSKRFILEITGRNPEKIAPFLQEKNIQAQIVPYKEAIDIHQKFVFLLFKPYNLKDFN
YQGQAKSVLSALAGVNFEALSNAINSLHYLKCMPNIASKFALSSTAVCEKSVAPSISEKALNIIESFGNCVRVGNEEQVD
ASIATNGSALAFLSLVASSLKDAGIREGLNARDSLELVKMSFKGFAKLLEKERPGMIIEQICTPKGATIEGLSVLEKKGV
RGAFIEACHESVKKMRL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=52788 U063_RS00970 WP_023591604.1 193682..194455(-) (proC) [Helicobacter pylori BM012A]
ATGGAAATCTTACAATTCATCGGCTATGGGAATATGGTTCAAGCGATTTTAGAAGGCGCTCATGAAATTTTATCCAAGCG
TTTTATTTTAGAAATTACCGGGCGAAACCCTGAAAAAATCGCCCCTTTTTTACAAGAAAAAAACATTCAAGCCCAAATCG
TGCCTTACAAAGAAGCTATTGATATACACCAAAAATTCGTGTTTTTACTTTTTAAGCCTTACAACCTTAAAGATTTTAAT
TATCAAGGGCAAGCCAAAAGCGTTTTGAGCGCGTTAGCCGGGGTGAATTTTGAAGCTTTAAGTAATGCGATTAATTCTTT
ACATTACTTAAAATGCATGCCTAACATTGCGAGCAAATTCGCTCTTTCTTCTACGGCGGTGTGTGAAAAATCGGTTGCAC
CTTCAATAAGCGAGAAAGCTTTGAATATTATTGAGAGTTTTGGGAATTGCGTGCGAGTGGGCAATGAAGAGCAGGTGGAT
GCCAGTATAGCGACCAATGGGAGTGCGCTCGCTTTTTTAAGCTTGGTAGCGAGCAGTTTGAAAGACGCCGGTATTAGAGA
GGGCTTGAACGCTAGAGATTCTTTAGAGTTGGTGAAAATGAGTTTTAAAGGCTTTGCCAAGCTGTTAGAAAAAGAACGCC
CTGGGATGATCATAGAGCAAATTTGCACCCCTAAAGGCGCAACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGAGGAGCGTTTATAGAAGCTTGCCATGAAAGCGTGAAAAAAATGCGCCTCTAA

Domains

Predicted by InterProScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-255)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

37.008

98.833

0.366