Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   I6I52_RS15095 Genome accession   NZ_CP068180
Coordinates   3235954..3236388 (-) Length   144 a.a.
NCBI ID   WP_004985143.1    Uniprot ID   -
Organism   Acinetobacter ursingii strain FDAARGOS_1095     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3230954..3241388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I52_RS15065 (I6I52_15065) - 3231513..3232553 (+) 1041 WP_004985156.1 lipase secretion chaperone -
  I6I52_RS15070 (I6I52_15070) - 3232646..3233608 (+) 963 WP_004985154.1 triacylglycerol lipase -
  I6I52_RS15075 (I6I52_15075) rplS 3233668..3234039 (-) 372 WP_004985149.1 50S ribosomal protein L19 -
  I6I52_RS15080 (I6I52_15080) trmD 3234187..3234930 (-) 744 WP_004985147.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  I6I52_RS15085 (I6I52_15085) rimM 3234984..3235532 (-) 549 WP_004985145.1 ribosome maturation factor RimM -
  I6I52_RS15090 (I6I52_15090) rpsP 3235547..3235804 (-) 258 WP_004923845.1 30S ribosomal protein S16 -
  I6I52_RS15095 (I6I52_15095) comF 3235954..3236388 (-) 435 WP_004985143.1 type IV pilin protein Machinery gene
  I6I52_RS15100 (I6I52_15100) - 3236382..3236990 (-) 609 WP_004985142.1 type IV pilin protein -
  I6I52_RS15105 (I6I52_15105) - 3236992..3240978 (-) 3987 WP_004985135.1 hypothetical protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15797.09 Da        Isoelectric Point: 8.4123

>NTDB_id=527869 I6I52_RS15095 WP_004985143.1 3235954..3236388(-) (comF) [Acinetobacter ursingii strain FDAARGOS_1095]
MVNKGFTLIEVMIVVVIIAILVAIAYPSYTQYRIRTNRSDVQKELLNIAQQMSAYKVAIGTYAGTNVNTIYGSTVYPQES
TAIYDLTFDPVTTTASEWVLIAKPKSATIQAGNGWICLNDQGQKYWTKGATACALSATSNWDGR

Nucleotide


Download         Length: 435 bp        

>NTDB_id=527869 I6I52_RS15095 WP_004985143.1 3235954..3236388(-) (comF) [Acinetobacter ursingii strain FDAARGOS_1095]
ATGGTAAATAAAGGATTTACCCTAATAGAGGTCATGATCGTTGTAGTGATTATTGCAATATTAGTTGCGATAGCTTATCC
CTCTTATACTCAGTATAGAATCCGTACGAATCGATCAGATGTGCAGAAAGAGTTATTGAATATCGCGCAACAAATGTCTG
CTTATAAAGTTGCTATAGGCACTTATGCCGGAACAAATGTAAATACTATATACGGTTCAACTGTTTACCCTCAAGAATCG
ACAGCAATTTACGATTTGACATTTGACCCAGTAACTACTACTGCGTCTGAATGGGTACTTATTGCCAAACCTAAAAGTGC
AACAATCCAAGCTGGGAATGGCTGGATTTGTCTCAATGATCAAGGTCAAAAATATTGGACCAAAGGTGCAACGGCTTGTG
CTCTTTCTGCCACCTCCAACTGGGACGGACGATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-26)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(27-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

53.846

99.306

0.535
  pilE Acinetobacter baumannii D1279779

53.901

97.917

0.528