Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   I6I52_RS11060 Genome accession   NZ_CP068180
Coordinates   2371186..2371641 (-) Length   151 a.a.
NCBI ID   WP_004988647.1    Uniprot ID   A0A3F3L6Q8
Organism   Acinetobacter ursingii strain FDAARGOS_1095     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 2368045..2370487 2371186..2371641 flank 699


Gene organization within MGE regions


Location: 2368045..2371641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I52_RS11045 (I6I52_11045) tnpC 2368045..2369652 (-) 1608 WP_004985690.1 IS66 family transposase -
  I6I52_RS11050 (I6I52_11050) tnpB 2369727..2370062 (-) 336 WP_004988643.1 IS66 family insertion sequence element accessory protein TnpB -
  I6I52_RS11055 (I6I52_11055) tnpA 2370059..2370487 (-) 429 WP_004985693.1 IS66-like element accessory protein TnpA -
  I6I52_RS17250 - 2370675..2370806 (-) 132 Protein_2163 IS3 family transposase -
  I6I52_RS11060 (I6I52_11060) pilE 2371186..2371641 (-) 456 WP_004988647.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16429.72 Da        Isoelectric Point: 8.4503

>NTDB_id=527857 I6I52_RS11060 WP_004988647.1 2371186..2371641(-) (pilE) [Acinetobacter ursingii strain FDAARGOS_1095]
MVAHHQFSIDRGFTLIELMVVVAIVAILVSIAYPNYQKYAQRTKRTDAQAEMLNIAKSMMQYKNSNSSFAGATVANVYGG
TVTPQQGTALYRLTFNPSPAIATGWTLVATPIENTSQDGDGIICLNDQGQKYWTKGATTCVLSAISTWDGR

Nucleotide


Download         Length: 456 bp        

>NTDB_id=527857 I6I52_RS11060 WP_004988647.1 2371186..2371641(-) (pilE) [Acinetobacter ursingii strain FDAARGOS_1095]
ATGGTAGCACATCATCAATTTTCAATAGATCGCGGGTTTACTTTAATCGAGCTCATGGTGGTGGTCGCTATAGTGGCCAT
CTTAGTGTCGATAGCTTATCCAAATTATCAAAAGTATGCACAACGTACTAAAAGGACAGATGCGCAGGCGGAAATGTTAA
ATATAGCTAAAAGCATGATGCAATATAAAAACAGCAATTCATCTTTTGCAGGAGCAACGGTTGCTAACGTATATGGCGGA
ACTGTCACACCTCAACAAGGGACTGCTTTATATCGTTTAACATTTAATCCTAGTCCTGCTATTGCAACAGGATGGACATT
AGTCGCTACGCCAATAGAGAATACGTCGCAGGATGGTGATGGAATCATTTGTCTCAATGACCAAGGTCAAAAATATTGGA
CCAAAGGTGCGACTACTTGTGTTCTTTCAGCTATCTCTACGTGGGACGGTCGCTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-124)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3F3L6Q8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

53.901

93.377

0.503
  comF Acinetobacter baylyi ADP1

48.252

94.702

0.457