Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   I6I53_RS06570 Genome accession   NZ_CP068176
Coordinates   1281551..1281985 (+) Length   144 a.a.
NCBI ID   WP_004995236.1    Uniprot ID   A0A7T9UK81
Organism   Acinetobacter ursingii strain FDAARGOS_1096     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1276551..1286985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I53_RS06560 (I6I53_06565) - 1277009..1280947 (+) 3939 WP_004995239.1 hypothetical protein -
  I6I53_RS06565 (I6I53_06570) - 1280949..1281557 (+) 609 WP_004995237.1 type IV pilin protein -
  I6I53_RS06570 (I6I53_06575) pilE 1281551..1281985 (+) 435 WP_004995236.1 type IV pilin protein Machinery gene
  I6I53_RS06575 (I6I53_06580) rpsP 1282134..1282391 (+) 258 WP_004923845.1 30S ribosomal protein S16 -
  I6I53_RS06580 (I6I53_06585) rimM 1282406..1282954 (+) 549 WP_004995234.1 ribosome maturation factor RimM -
  I6I53_RS06585 (I6I53_06590) trmD 1283008..1283751 (+) 744 WP_004995231.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  I6I53_RS06590 (I6I53_06595) rplS 1283899..1284270 (+) 372 WP_004985149.1 50S ribosomal protein L19 -
  I6I53_RS06595 (I6I53_06600) - 1284339..1285307 (-) 969 WP_004995227.1 triacylglycerol lipase -
  I6I53_RS06600 (I6I53_06605) - 1285440..1286468 (-) 1029 WP_004995222.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15582.78 Da        Isoelectric Point: 8.8939

>NTDB_id=527825 I6I53_RS06570 WP_004995236.1 1281551..1281985(+) (pilE) [Acinetobacter ursingii strain FDAARGOS_1096]
MVNKGFTLIEVMIVVVIIAILAAIAYPSYTQYRVRTNRSDVQKELLNIAQQMSAYKVATGTYAGTNVNTIYGSTAYPQGS
AAIYDLTFDPVTTTASEWVLIAKPKSATIQAGNGWICLNDQGQKYWAKGATACALSATSNWDGR

Nucleotide


Download         Length: 435 bp        

>NTDB_id=527825 I6I53_RS06570 WP_004995236.1 1281551..1281985(+) (pilE) [Acinetobacter ursingii strain FDAARGOS_1096]
ATGGTAAATAAAGGATTTACCCTAATAGAGGTCATGATAGTTGTAGTTATTATTGCAATATTAGCTGCAATAGCTTATCC
CTCTTATACTCAGTATAGAGTCCGTACGAATCGATCAGATGTGCAGAAAGAGTTATTGAATATCGCGCAACAAATGTCTG
CTTATAAAGTTGCTACAGGCACTTATGCCGGAACAAATGTAAATACTATATACGGTTCAACTGCTTACCCTCAAGGATCG
GCAGCAATTTACGATTTGACATTTGACCCAGTAACTACTACTGCGTCTGAATGGGTACTTATTGCCAAACCTAAAAGTGC
AACAATCCAAGCTGGGAATGGCTGGATTTGTCTCAATGATCAAGGTCAAAAATATTGGGCTAAAGGTGCAACGGCTTGTG
CTCTTTCTGCCACCTCCAACTGGGACGGACGATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-26)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(27-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

54.61

97.917

0.535
  comF Acinetobacter baylyi ADP1

53.147

99.306

0.528