Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   I6I58_RS07045 Genome accession   NZ_CP068172
Coordinates   1350811..1351539 (+) Length   242 a.a.
NCBI ID   WP_041570288.1    Uniprot ID   A0A7U8A6E3
Organism   Campylobacter lari strain FDAARGOS_1101     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1345811..1356539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I58_RS07940 - 1346456..1347193 (+) 738 WP_393917198.1 methyl-accepting chemotaxis protein -
  I6I58_RS07030 (I6I58_07030) lon 1347205..1349583 (-) 2379 WP_074691842.1 endopeptidase La -
  I6I58_RS07035 (I6I58_07035) bamD 1349583..1350239 (-) 657 WP_012661667.1 outer membrane protein assembly factor BamD -
  I6I58_RS07040 (I6I58_07040) fliW 1350416..1350811 (+) 396 WP_012661666.1 flagellar assembly protein FliW -
  I6I58_RS07045 (I6I58_07045) proC 1350811..1351539 (+) 729 WP_041570288.1 pyrroline-5-carboxylate reductase Machinery gene
  I6I58_RS07050 (I6I58_07050) - 1351536..1351832 (+) 297 WP_012661664.1 hypothetical protein -
  I6I58_RS07055 (I6I58_07055) - 1351816..1352544 (+) 729 WP_012661663.1 type II secretion system protein -
  I6I58_RS07060 (I6I58_07060) - 1352541..1352963 (+) 423 WP_012661662.1 hypothetical protein -
  I6I58_RS07065 (I6I58_07065) - 1352945..1353586 (-) 642 WP_012661661.1 MarC family protein -
  I6I58_RS07070 (I6I58_07070) rpsR 1353638..1353898 (-) 261 WP_012661660.1 30S ribosomal protein S18 -
  I6I58_RS07075 (I6I58_07075) - 1353909..1354436 (-) 528 WP_012661659.1 single-stranded DNA-binding protein -
  I6I58_RS07080 (I6I58_07080) rpsF 1354440..1354814 (-) 375 WP_012661658.1 30S ribosomal protein S6 -
  I6I58_RS07085 (I6I58_07085) holA 1354906..1355871 (-) 966 WP_012661657.1 DNA polymerase III subunit delta -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 26473.71 Da        Isoelectric Point: 7.2137

>NTDB_id=527783 I6I58_RS07045 WP_041570288.1 1350811..1351539(+) (proC) [Campylobacter lari strain FDAARGOS_1101]
MSEIYILGNGAMASAIAKGIGDAYEVIIVARDLKKASSLNFKVISYNEFDMDNKNIILAFKPYALEEVAVKLKGKARWLI
SVLANTTFEQLHCIDAQNYIKIMPNTAAQFKASATAYLMENDLYKDEILSLLSTFGKAISLQNEKEFDIAMVLSGCAPAF
LALVAESLANAGVKNGLKNELSYELTRASFESFGALFNHIHPAIIKEKICSPAGVTIRGVEALEKRALRGAFFEAFNASL
NK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=527783 I6I58_RS07045 WP_041570288.1 1350811..1351539(+) (proC) [Campylobacter lari strain FDAARGOS_1101]
ATGTCTGAAATTTATATTTTAGGAAATGGTGCTATGGCTAGTGCTATAGCAAAAGGTATAGGTGATGCTTATGAGGTGAT
AATAGTTGCAAGAGATTTAAAAAAGGCAAGTAGTTTGAATTTCAAAGTCATATCATACAATGAGTTTGATATGGATAATA
AAAATATTATTTTGGCTTTTAAACCTTATGCGTTAGAAGAAGTAGCTGTTAAATTAAAAGGCAAGGCAAGATGGCTTATT
TCAGTTTTAGCAAATACTACTTTTGAGCAACTTCATTGTATTGATGCACAAAATTATATAAAAATTATGCCAAATACAGC
AGCCCAATTTAAAGCCTCAGCGACTGCGTATTTGATGGAAAATGATTTATATAAAGACGAAATTTTATCATTGCTAAGTA
CTTTTGGTAAAGCTATAAGTTTACAAAATGAAAAAGAATTTGATATAGCTATGGTTTTGAGTGGTTGTGCTCCTGCGTTT
TTGGCTTTGGTAGCAGAAAGTTTAGCTAATGCGGGTGTGAAAAATGGTTTAAAAAATGAGCTTAGCTATGAGCTTACTCG
CGCAAGTTTTGAAAGCTTTGGTGCTTTATTTAACCATATACATCCTGCTATTATTAAAGAAAAAATTTGTTCTCCGGCAG
GGGTGACTATAAGAGGGGTTGAGGCTTTAGAAAAAAGAGCTTTGCGTGGTGCTTTTTTTGAAGCTTTTAATGCAAGTTTA
AATAAATGA

Domains

Predicted by InterproScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(144-241)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U8A6E3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

57.741

98.76

0.57