Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   I6I61_RS04155 Genome accession   NZ_CP068171
Coordinates   883889..884542 (-) Length   217 a.a.
NCBI ID   WP_130913819.1    Uniprot ID   -
Organism   Chryseobacterium sp. FDAARGOS 1104 strain FDAARGOS_1104     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 878889..889542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I61_RS04125 (I6I61_04125) der 879177..880487 (+) 1311 WP_130913824.1 ribosome biogenesis GTPase Der -
  I6I61_RS04130 (I6I61_04130) upp 880569..881222 (+) 654 WP_130913823.1 uracil phosphoribosyltransferase -
  I6I61_RS04135 (I6I61_04135) - 881355..881882 (+) 528 WP_130913822.1 RNA polymerase sigma factor -
  I6I61_RS04140 (I6I61_04140) - 881872..882156 (+) 285 WP_089745281.1 hypothetical protein -
  I6I61_RS04145 (I6I61_04145) - 882149..882592 (+) 444 WP_130913821.1 hypothetical protein -
  I6I61_RS04150 (I6I61_04150) - 882646..883845 (+) 1200 WP_130913820.1 cytochrome-c peroxidase -
  I6I61_RS04155 (I6I61_04155) comF 883889..884542 (-) 654 WP_130913819.1 ComF family protein Machinery gene
  I6I61_RS04160 (I6I61_04160) - 884659..885633 (-) 975 WP_130913818.1 deoxyhypusine synthase family protein -
  I6I61_RS04165 (I6I61_04165) - 885661..886329 (-) 669 WP_130913817.1 hypothetical protein -
  I6I61_RS04170 (I6I61_04170) arfB 886377..886769 (-) 393 WP_130913816.1 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB -
  I6I61_RS04175 (I6I61_04175) - 886790..887812 (-) 1023 WP_201898399.1 AMP-binding protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25604.67 Da        Isoelectric Point: 8.0443

>NTDB_id=527753 I6I61_RS04155 WP_130913819.1 883889..884542(-) (comF) [Chryseobacterium sp. FDAARGOS 1104 strain FDAARGOS_1104]
MILDLLFPNRCLECNRIIESELLVCPVCFSQIQFTYHDFLSENSFKERCKLLFPLENAFALMEFEKESLSRKIIHELKYK
SREKTGKILAEWTTEYLDFKDEKPDLMVTVPLHPRKTKERGYNQLHLFTERLSQSYQIPFDHTLIKRNYYSSAQALKNRK
RRLENQNTFSVTKTIEDTHILLIDDVFTTGNTLASVVWEILKKGNNKISVLVMAMDV

Nucleotide


Download         Length: 654 bp        

>NTDB_id=527753 I6I61_RS04155 WP_130913819.1 883889..884542(-) (comF) [Chryseobacterium sp. FDAARGOS 1104 strain FDAARGOS_1104]
ATGATTTTAGATTTGTTATTTCCCAACCGCTGTCTGGAATGCAACCGGATCATCGAAAGCGAATTATTGGTTTGCCCAGT
CTGTTTCAGCCAGATTCAATTTACCTATCATGACTTTTTATCTGAAAATTCATTCAAAGAGAGATGTAAATTACTTTTTC
CGCTGGAAAATGCTTTTGCACTCATGGAATTTGAAAAAGAAAGCCTTAGCCGCAAAATCATTCATGAATTAAAATATAAA
AGCAGAGAAAAAACCGGAAAGATTTTAGCAGAATGGACTACAGAATATCTTGATTTTAAAGATGAGAAACCTGACTTAAT
GGTTACTGTTCCACTGCACCCCAGGAAAACAAAAGAAAGAGGATATAATCAGCTTCACCTTTTTACCGAACGGCTTTCCC
AGTCATATCAAATCCCTTTTGACCATACTTTAATCAAACGAAATTATTATTCTTCAGCCCAGGCTCTCAAGAACAGAAAA
CGCAGGCTCGAAAACCAAAACACATTTTCGGTTACCAAAACAATCGAAGACACTCATATACTTCTTATTGATGATGTATT
TACAACAGGAAACACGCTGGCTTCCGTTGTATGGGAAATTTTAAAGAAAGGAAATAATAAGATAAGTGTCTTGGTTATGG
CAATGGATGTGTGA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

53.704

99.539

0.535