Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   I6I62_RS12760 Genome accession   NZ_CP068170
Coordinates   2624074..2625831 (-) Length   585 a.a.
NCBI ID   WP_201899760.1    Uniprot ID   -
Organism   Thomasclavelia ramosa strain FDAARGOS_1105     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2619074..2630831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I62_RS12740 (I6I62_12740) - 2619249..2620217 (+) 969 WP_003535233.1 P1 family peptidase -
  I6I62_RS12745 (I6I62_12745) - 2620386..2621006 (+) 621 WP_003535234.1 ECF transporter S component -
  I6I62_RS12750 (I6I62_12750) - 2621280..2622128 (+) 849 WP_003535235.1 Cof-type HAD-IIB family hydrolase -
  I6I62_RS12755 (I6I62_12755) rcrQ 2622254..2624074 (-) 1821 WP_008792457.1 ABC transporter ATP-binding protein Regulator
  I6I62_RS12760 (I6I62_12760) rcrP 2624074..2625831 (-) 1758 WP_201899760.1 ABC transporter ATP-binding protein Regulator
  I6I62_RS12765 (I6I62_12765) - 2625941..2626996 (-) 1056 WP_201899762.1 sensor histidine kinase -
  I6I62_RS12770 (I6I62_12770) - 2626983..2627663 (-) 681 WP_003535239.1 response regulator transcription factor -
  I6I62_RS12775 (I6I62_12775) - 2627831..2628214 (-) 384 WP_003535240.1 DUF956 family protein -
  I6I62_RS12780 (I6I62_12780) - 2628257..2629174 (-) 918 WP_003535241.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
  I6I62_RS12785 (I6I62_12785) - 2629198..2630013 (-) 816 WP_003535242.1 PTS mannose/fructose/sorbose transporter subunit IIC -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 64732.32 Da        Isoelectric Point: 7.0160

>NTDB_id=527748 I6I62_RS12760 WP_201899760.1 2624074..2625831(-) (rcrP) [Thomasclavelia ramosa strain FDAARGOS_1105]
MIKIFKNFTKKDWSLIIICLAFIILQVWLDLKLPDYMSKITMLVQTTGSTMDEIIESGVKMLGCALGSLASSVVVAIFAA
RVATNFAANLRERLFDKVQAFSMEEIGSFSTASLITRSTNDISQIQTLVVMGLQAIIKAPIMAVWAIFKIAGKSWQWTAS
TGVAVIVLLVIVGSCMIFALPKFKKLQQLTDDLNRVTRENLTGISVVRAYNAENYQENKFENANQELTSANLFANRVMAI
MSPGIQGIMSGLTLAIYWIGAILIENAAMMDKLNLFSDMVVFSTYAMQVVMAFMMLVMIFIMFPRASVSSKRIMEVLETV
PIINDGTVTVAKPGIKGQIEFKNVSFKYPDAEDYVLQNITFTVAQGETVAFIGSTGCGKSTVINLVPRFYDVTEGEVLVD
GINVKAYTQYALHNKIGYVSQKAVLFSGTIESNVAYGDNGRNNNLQNNVIDAIYTAQASDFVEASPRRYNSYVAQGGSNY
SGGQKQRISIARAICRQPEIMIFDDSFSALDYKTDQKLREALKKDCCDATKLIVAQRIGTIRDADKIIVLDEGVIVGMGT
HEDLMKNCQVYQQIVRSQLSKEELE

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=527748 I6I62_RS12760 WP_201899760.1 2624074..2625831(-) (rcrP) [Thomasclavelia ramosa strain FDAARGOS_1105]
ATGATAAAAATATTTAAAAACTTTACTAAAAAAGATTGGAGCTTAATTATTATCTGTCTAGCATTTATTATTTTACAAGT
ATGGTTAGATCTTAAACTCCCAGATTATATGTCAAAAATAACAATGCTAGTCCAAACAACAGGAAGTACAATGGATGAAA
TAATTGAGTCAGGTGTAAAGATGTTAGGATGTGCATTAGGAAGTTTAGCTTCATCGGTAGTTGTAGCAATCTTTGCAGCA
AGGGTAGCTACAAATTTTGCTGCTAATTTAAGAGAGCGATTGTTTGATAAAGTACAAGCTTTTTCAATGGAAGAAATTGG
TAGTTTCTCAACAGCAAGTCTGATTACACGTTCAACTAATGATATTTCACAAATTCAAACACTTGTTGTAATGGGATTAC
AAGCTATTATTAAGGCACCGATTATGGCTGTTTGGGCAATTTTCAAGATTGCTGGTAAAAGCTGGCAATGGACAGCTTCA
ACGGGTGTAGCTGTAATCGTTTTATTAGTTATTGTAGGAAGTTGCATGATTTTTGCATTACCAAAATTTAAAAAATTACA
ACAGTTGACAGATGATTTGAATCGGGTTACTCGTGAAAATTTAACGGGAATAAGTGTTGTTCGGGCTTATAATGCTGAGA
ATTATCAAGAGAATAAATTTGAAAATGCCAATCAGGAGTTAACCTCAGCAAACTTGTTTGCAAACCGAGTTATGGCAATC
ATGAGTCCAGGAATTCAAGGAATCATGAGTGGTCTGACATTGGCCATTTATTGGATTGGAGCCATCCTGATTGAAAATGC
TGCTATGATGGATAAACTAAACTTATTTTCAGATATGGTGGTATTTTCTACATATGCAATGCAAGTAGTTATGGCTTTTA
TGATGCTTGTTATGATTTTTATAATGTTTCCAAGAGCATCGGTTTCATCAAAGCGAATCATGGAAGTATTAGAAACAGTA
CCAATAATTAATGATGGTACAGTAACTGTCGCTAAACCGGGTATTAAAGGACAAATTGAATTTAAAAATGTCAGTTTTAA
ATATCCTGATGCTGAAGATTATGTTTTACAAAATATTACTTTTACTGTTGCTCAAGGAGAAACAGTTGCTTTTATCGGTT
CAACTGGATGCGGTAAAAGTACAGTGATTAATCTAGTTCCACGTTTTTATGATGTAACAGAAGGTGAAGTACTCGTAGAT
GGGATTAATGTTAAAGCTTATACACAATATGCCTTACATAACAAAATCGGTTATGTATCCCAAAAAGCAGTTCTTTTTAG
TGGAACTATTGAATCTAATGTTGCCTATGGTGATAATGGTAGAAATAATAATCTTCAAAACAATGTCATTGATGCCATTT
ATACCGCTCAAGCTTCTGATTTTGTTGAGGCTTCACCACGCCGATATAATAGCTATGTTGCCCAAGGCGGTTCTAATTAC
TCAGGTGGGCAAAAGCAACGGATTTCTATTGCCCGGGCAATATGTCGTCAACCCGAAATTATGATTTTTGATGATTCGTT
TTCTGCACTAGACTATAAAACAGATCAAAAACTTCGAGAAGCTTTAAAGAAAGATTGTTGCGATGCAACCAAATTGATCG
TTGCTCAACGAATTGGTACGATTCGAGATGCTGATAAAATTATTGTTCTTGATGAAGGGGTTATTGTAGGGATGGGAACA
CATGAAGACTTAATGAAGAATTGTCAAGTTTACCAACAAATAGTTCGTTCACAGTTATCAAAGGAGGAATTAGAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(16-293)

ABC transporter (ABC_tran)

(356-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

51.256

100

0.523