Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   I6I62_RS04535 Genome accession   NZ_CP068170
Coordinates   918468..920321 (+) Length   617 a.a.
NCBI ID   WP_117582047.1    Uniprot ID   -
Organism   Thomasclavelia ramosa strain FDAARGOS_1105     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 913468..925321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I62_RS17145 - 913760..914107 (+) 348 WP_227158434.1 endonuclease/exonuclease/phosphatase family protein -
  I6I62_RS17150 - 914165..914566 (+) 402 WP_233523236.1 endonuclease/exonuclease/phosphatase family protein -
  I6I62_RS04515 (I6I62_04515) - 914658..915077 (+) 420 WP_117792589.1 C-GCAxxG-C-C family protein -
  I6I62_RS17430 - 915246..915368 (+) 123 WP_008791654.1 hypothetical protein -
  I6I62_RS04525 (I6I62_04525) - 915795..916247 (+) 453 WP_003537632.1 MarR family winged helix-turn-helix transcriptional regulator -
  I6I62_RS04530 (I6I62_04530) - 916247..918475 (+) 2229 WP_008791655.1 ABC transporter ATP-binding protein -
  I6I62_RS04535 (I6I62_04535) rcrQ 918468..920321 (+) 1854 WP_117582047.1 ABC transporter ATP-binding protein Regulator
  I6I62_RS04540 (I6I62_04540) - 920398..921720 (+) 1323 WP_009009830.1 AAA family ATPase -
  I6I62_RS04545 (I6I62_04545) - 921730..922104 (+) 375 WP_201900284.1 DUF3795 domain-containing protein -
  I6I62_RS04550 (I6I62_04550) - 922169..923008 (+) 840 WP_008791658.1 DUF368 domain-containing protein -
  I6I62_RS04555 (I6I62_04555) - 923172..923354 (+) 183 WP_233637999.1 hypothetical protein -
  I6I62_RS17625 - 923497..923652 (+) 156 WP_003537648.1 DUF6323 family protein -
  I6I62_RS04560 (I6I62_04560) - 923893..924963 (+) 1071 WP_003537650.1 competence/damage-inducible protein A -
  I6I62_RS04565 (I6I62_04565) - 924973..925224 (+) 252 WP_003537653.1 hypothetical protein -

Sequence

Protein


Download         Length: 617 a.a.        Molecular weight: 67832.98 Da        Isoelectric Point: 5.2675

>NTDB_id=527739 I6I62_RS04535 WP_117582047.1 918468..920321(+) (rcrQ) [Thomasclavelia ramosa strain FDAARGOS_1105]
MSNQPKRNGPKFGPGGMHGMRGGEKAKDFKGTLGKLFKYLRPYYFRLVIVVIFASASTVFAIVGPKILAKATDKLSEGIM
AKVAGTGGIDFDYIGQIILILVGLYLISALFSYIQGFITSTISQRVAYDLRTSISQKMDRMPLSYFDKHTSGDILSRVTN
DIDTIAQSLNQSMSQVITSTVTVIGIFIMMLTISPVMTLIAVCVLPVSMVLIGLVMKRSQKYFAHQQAALGDVNGHIEEM
YGGHNVVKAFNGEAASVEQFNEYNDNLYESAWKSQFFSGLMQPITGFVGNVGYVAVCLLGGVLAGGGSITIGDIQAFIQY
VRQFNQPITQLAQTMNMLQSTAAAAERVFEFLGEEELEPETPKVTADEVAKVEGSVTFADVNFGYLKDQTIINDFSLHVH
AGQTVAIVGPTGAGKTTIVKLLMRFYELNSGSILIDGKDIRDFGRQDLRSLFGMVLQDTWLFNGTIKENLMYGKLDASDE
EVKEACKVAYVDHFVQTLENGYETMINEESSNISQGQKQLLTIARAFLKDPKILILDEATSSVDTRTEVLIQKGMEKLME
GRTSFVIAHRLSTIRDADTIIVMKDGDIVELGNHDSLLAKDGFYASLYRSQFEGSDE

Nucleotide


Download         Length: 1854 bp        

>NTDB_id=527739 I6I62_RS04535 WP_117582047.1 918468..920321(+) (rcrQ) [Thomasclavelia ramosa strain FDAARGOS_1105]
ATGAGTAATCAACCAAAAAGAAATGGTCCTAAATTCGGACCTGGTGGTATGCACGGAATGCGTGGCGGTGAAAAAGCTAA
AGATTTTAAAGGTACTTTAGGTAAATTATTTAAATATTTAAGACCGTATTATTTTCGTTTAGTTATAGTTGTGATTTTTG
CTTCAGCATCAACGGTTTTTGCAATCGTAGGACCAAAGATTTTAGCTAAAGCAACAGATAAATTAAGTGAAGGTATCATG
GCTAAAGTAGCTGGTACTGGTGGAATTGATTTTGATTATATTGGTCAAATTATTTTGATTTTAGTTGGATTGTATTTGAT
TAGTGCTTTATTTAGTTATATACAAGGTTTTATTACTTCAACTATTTCACAACGAGTTGCTTATGATTTAAGAACATCAA
TTTCTCAAAAGATGGATCGGATGCCATTAAGTTATTTTGATAAACATACTAGTGGTGATATTTTAAGCCGAGTAACAAAT
GATATCGATACAATCGCACAATCACTAAATCAAAGTATGTCACAGGTAATTACGTCGACAGTAACGGTAATTGGAATCTT
TATCATGATGTTGACTATTTCACCAGTTATGACTTTGATCGCAGTTTGCGTATTACCAGTATCAATGGTTTTGATTGGTT
TAGTAATGAAACGTTCACAAAAATATTTTGCGCATCAACAAGCTGCTTTAGGTGATGTCAATGGTCATATTGAAGAAATG
TATGGTGGTCATAATGTGGTTAAAGCATTTAATGGTGAAGCTGCTTCAGTAGAACAATTTAATGAGTATAATGATAATTT
ATATGAAAGTGCTTGGAAGTCACAATTCTTTTCGGGTTTGATGCAGCCAATCACAGGATTTGTTGGAAATGTTGGATACG
TTGCGGTATGTTTATTAGGTGGTGTTCTTGCTGGTGGTGGTAGTATCACAATTGGTGATATTCAGGCCTTTATTCAATAT
GTAAGACAATTTAATCAACCAATAACACAATTAGCACAGACAATGAATATGTTACAAAGTACAGCAGCAGCGGCTGAACG
TGTTTTTGAATTTTTAGGTGAAGAAGAATTAGAACCAGAAACACCAAAAGTTACTGCTGATGAGGTGGCTAAAGTTGAAG
GTTCTGTTACCTTTGCTGATGTTAATTTTGGATATTTAAAAGATCAAACGATTATTAATGATTTTAGTTTACATGTTCAT
GCGGGGCAAACTGTTGCAATTGTAGGACCGACTGGTGCTGGAAAAACAACGATCGTAAAATTATTAATGCGATTCTATGA
ATTAAATAGTGGTTCGATTCTTATTGATGGTAAAGATATTCGTGATTTTGGACGTCAGGATTTACGATCATTATTTGGAA
TGGTTTTACAAGATACTTGGTTGTTTAATGGAACAATTAAGGAAAACCTAATGTATGGAAAATTAGATGCAAGTGATGAA
GAAGTCAAGGAGGCTTGTAAAGTCGCTTATGTTGATCATTTTGTACAAACATTAGAGAATGGATATGAAACAATGATCAA
TGAGGAATCATCTAACATTTCTCAAGGGCAAAAACAACTTTTAACAATTGCACGTGCTTTCTTAAAAGATCCAAAAATTT
TGATTCTTGATGAAGCAACTTCTTCAGTAGATACAAGAACAGAAGTATTAATTCAAAAAGGAATGGAAAAGCTAATGGAG
GGAAGAACAAGTTTTGTCATTGCCCATCGTTTATCAACAATTCGTGATGCTGACACAATTATTGTAATGAAAGATGGTGA
CATTGTAGAACTTGGAAATCATGATTCATTATTGGCTAAAGATGGCTTCTATGCCTCATTGTATCGTTCTCAATTCGAGG
GATCAGATGAATAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(47-327)

ABC transporter (ABC_tran)

(393-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.316

94.489

0.494