Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   BAJP3042_RS13540 Genome accession   NZ_CP082243
Coordinates   2802233..2804590 (-) Length   785 a.a.
NCBI ID   WP_060562704.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP3042     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2797233..2809590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3042_RS13515 (BAJP3042_13515) - 2797739..2798518 (-) 780 WP_222835232.1 enoyl-CoA hydratase -
  BAJP3042_RS13520 (BAJP3042_13520) - 2798532..2799116 (-) 585 WP_007408119.1 TetR/AcrR family transcriptional regulator -
  BAJP3042_RS13525 (BAJP3042_13525) - 2799205..2800893 (-) 1689 WP_222835233.1 AMP-binding protein -
  BAJP3042_RS13530 (BAJP3042_13530) - 2800999..2801673 (+) 675 WP_222835234.1 DUF2711 family protein -
  BAJP3042_RS13535 (BAJP3042_13535) - 2801812..2802216 (-) 405 WP_003152541.1 DUF350 domain-containing protein -
  BAJP3042_RS13540 (BAJP3042_13540) mutS/mutS2 2802233..2804590 (-) 2358 WP_060562704.1 endonuclease MutS2 Machinery gene
  BAJP3042_RS13545 (BAJP3042_13545) polX 2804611..2806323 (-) 1713 WP_043021588.1 DNA polymerase/3'-5' exonuclease PolX -
  BAJP3042_RS13550 (BAJP3042_13550) - 2806430..2806963 (-) 534 WP_007612958.1 CvpA family protein -
  BAJP3042_RS13555 (BAJP3042_13555) zapA 2806971..2807228 (-) 258 WP_007408114.1 cell division protein ZapA -
  BAJP3042_RS13560 (BAJP3042_13560) rnhC 2807362..2808303 (+) 942 WP_012118136.1 ribonuclease HIII -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 87262.55 Da        Isoelectric Point: 6.3883

>NTDB_id=527618 BAJP3042_RS13540 WP_060562704.1 2802233..2804590(-) (mutS/mutS2) [Bacillus amyloliquefaciens strain JP3042]
MQQKVLSSLEFHKVKEQITAHAASSLGREKLLQLKPLTDLSDIQKQLDEVEEASAVMRLRGHAPFGGLTDIRSALRRAEI
GSVLTPAEFTELSGLLYAVKQMKHFISQMTEDGVSIPLIQAHAEELITLGDLEREINSCIDDHGEVLDHASPALRGIRTQ
LRTLESRVRDRLESMLRSSSASKMLSDTIVTIRNDRFVIPVKQEYRSSYGGIVHDTSSSGATLFIEPQAIVDMNNSLQQA
KVKEKQEIERILRMLTEHTAEHTQEIAQNVEVLQTLDFIFAKARYAKAMKATKPLMNGDGFIRLKKARHPLLPQDQVVAN
DIELGGDYSTIVITGPNTGGKTVTLKTLGLLTIMAQAGLHIPADEGSEAAVFDNVFADIGDEQSIEQSLSTFSSHMVNIV
NILKDVSENSLVLFDELGAGTDPQEGAALAMSILDEVHRTNARVLATTHYPELKAYGYNRQGVMNASVEFDIETLSPTYK
LLIGVPGRSNAFEISRRLGLPEHIIGQAKSEMTAEHNEVDLMIASLEKSKKRADEELSETESIRKEAEKLHKDLQQQIIE
LNAQKDKMMEEAEQKAAEKLEAAANEAEQIIRELRSIKQEHRSFKEHELIDAKKRLGDAMPAFEKSKQPERKTEKKRELK
PGDEVKVLTFGQKGALLEKTGEKEWNVQIGILKMKVKEKDLEFLKSAPEPKKEKAITAVKGKDYHVSLELDLRGERYENA
LSRVEKYLDDAVLAGHPRVSIIHGKGTGALRKGVQDLLKNHRSVKSSRFGEAGEGGSGVTIVELK

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=527618 BAJP3042_RS13540 WP_060562704.1 2802233..2804590(-) (mutS/mutS2) [Bacillus amyloliquefaciens strain JP3042]
GTGCAGCAAAAAGTGTTATCATCACTTGAATTTCATAAAGTAAAAGAACAGATTACCGCACATGCCGCCTCATCGCTCGG
CCGGGAGAAGCTTCTGCAGCTGAAACCTTTGACGGATCTCTCAGACATCCAAAAACAGCTGGATGAAGTCGAAGAAGCAT
CCGCGGTCATGCGCTTGAGAGGCCATGCTCCGTTCGGCGGCCTGACCGACATAAGATCCGCTTTACGGCGGGCGGAAATC
GGCAGTGTGCTGACGCCCGCGGAATTCACCGAATTGTCCGGGCTGCTGTATGCCGTTAAACAAATGAAGCACTTTATCAG
CCAAATGACAGAAGACGGCGTCAGCATTCCGCTGATACAGGCCCATGCAGAAGAACTGATTACATTGGGCGATTTGGAAA
GGGAGATTAACTCCTGCATTGATGATCACGGCGAAGTGCTTGATCATGCATCCCCCGCTTTAAGGGGAATCCGCACGCAG
CTCAGGACGCTTGAATCAAGAGTCAGAGACCGGCTTGAATCGATGCTGCGTTCATCTTCCGCTTCTAAAATGCTGTCTGA
CACCATCGTTACGATTCGGAATGACCGCTTTGTCATCCCGGTCAAACAGGAATACAGATCAAGCTACGGCGGAATTGTCC
ACGATACATCTTCATCCGGTGCGACACTGTTTATTGAACCGCAGGCGATCGTAGATATGAACAACTCGCTTCAGCAGGCG
AAAGTAAAAGAAAAACAGGAAATCGAACGGATTCTCCGGATGCTGACGGAGCATACGGCTGAACACACACAAGAAATCGC
TCAAAATGTGGAAGTGCTGCAGACACTGGATTTCATTTTCGCCAAAGCGAGATACGCAAAAGCAATGAAGGCGACAAAAC
CACTTATGAACGGAGACGGCTTTATCCGTCTTAAAAAAGCGCGCCATCCGCTGCTGCCCCAAGATCAAGTCGTGGCCAAC
GATATTGAACTGGGCGGAGATTATTCAACGATCGTTATCACGGGACCGAATACGGGCGGTAAAACCGTTACGTTAAAAAC
ACTCGGGCTGCTGACGATAATGGCGCAGGCAGGATTGCACATACCAGCTGATGAGGGATCGGAAGCAGCAGTATTTGACA
ATGTGTTTGCCGATATCGGCGATGAACAGTCGATCGAACAAAGTCTGAGTACGTTCTCATCCCACATGGTCAATATCGTC
AATATTTTAAAAGACGTGTCTGAAAACAGTCTTGTGCTGTTTGATGAACTCGGTGCCGGAACAGATCCGCAGGAAGGAGC
GGCGCTTGCCATGAGCATCCTTGACGAAGTTCACCGGACAAACGCCAGAGTGCTTGCGACAACCCATTATCCGGAACTGA
AAGCATACGGATATAACAGACAAGGCGTCATGAATGCCAGCGTTGAATTTGACATTGAAACGCTTTCGCCTACCTATAAG
CTTCTGATCGGAGTGCCGGGCCGAAGCAACGCATTTGAAATCTCAAGACGCCTTGGGCTTCCGGAGCATATCATCGGCCA
GGCGAAGTCAGAAATGACCGCCGAACATAACGAAGTCGATCTGATGATCGCATCGCTTGAAAAAAGCAAAAAAAGAGCGG
ATGAAGAGCTTTCTGAAACCGAATCAATCAGAAAAGAAGCAGAAAAACTGCACAAAGATCTTCAGCAGCAAATCATTGAG
CTGAACGCCCAAAAAGATAAAATGATGGAAGAAGCCGAGCAGAAAGCTGCGGAAAAACTGGAAGCCGCCGCAAATGAAGC
AGAACAGATTATCCGCGAGCTCAGGTCCATCAAGCAAGAACACAGATCCTTTAAGGAACACGAGCTGATTGACGCCAAAA
AACGTCTCGGAGACGCGATGCCGGCTTTTGAAAAATCAAAGCAGCCGGAAAGAAAAACAGAGAAAAAACGCGAGCTGAAG
CCGGGCGACGAAGTAAAGGTGCTCACATTCGGACAAAAAGGGGCGCTGCTTGAGAAAACCGGCGAGAAAGAATGGAACGT
CCAAATCGGCATCCTCAAAATGAAGGTGAAGGAAAAAGATCTTGAGTTTCTCAAATCGGCTCCTGAACCGAAAAAAGAAA
AAGCAATCACCGCCGTAAAAGGGAAGGATTATCACGTATCCCTTGAACTTGACCTCAGGGGAGAGCGTTACGAAAACGCC
CTCAGCCGCGTCGAAAAATATTTAGATGACGCGGTGCTTGCCGGCCATCCGAGAGTGTCCATCATTCACGGAAAAGGCAC
GGGCGCCCTCCGAAAAGGGGTGCAGGATCTTCTGAAAAACCACCGCAGCGTGAAAAGCTCGCGGTTCGGGGAAGCGGGAG
AAGGAGGATCAGGCGTAACGATTGTCGAACTAAAATAA

Domains

Predicted by InterProScan.

Smr domain (Smr)

(710-785)

MutS domain V (MutS_V)

(331-512)

MutS2 and Smr-associated SH3 domain (MSSS)

(641-681)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

87.389

100

0.874