Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   K6973_RS09310 Genome accession   NZ_CP082206
Coordinates   1860813..1861595 (-) Length   260 a.a.
NCBI ID   WP_003053880.1    Uniprot ID   A0A9X9SKT8
Organism   Streptococcus dysgalactiae strain DY107     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1855813..1866595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6973_RS09280 (K6973_09280) - 1856477..1857070 (-) 594 WP_343237790.1 helix-turn-helix transcriptional regulator -
  K6973_RS09285 (K6973_09285) - 1857302..1857601 (-) 300 WP_222819282.1 rhodanese-like domain-containing protein -
  K6973_RS09290 (K6973_09290) - 1857594..1859246 (-) 1653 Protein_1787 FAD-dependent oxidoreductase -
  K6973_RS09295 (K6973_09295) - 1859264..1859602 (-) 339 WP_222819283.1 rhodanese-like domain-containing protein -
  K6973_RS09300 (K6973_09300) - 1859808..1860068 (+) 261 WP_003053835.1 metal-sensitive transcriptional regulator -
  K6973_RS09305 (K6973_09305) - 1860135..1860686 (-) 552 WP_222819720.1 isochorismatase family cysteine hydrolase -
  K6973_RS09310 (K6973_09310) codY 1860813..1861595 (-) 783 WP_003053880.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  K6973_RS09315 (K6973_09315) - 1861860..1863074 (-) 1215 WP_222819284.1 pyridoxal phosphate-dependent aminotransferase -
  K6973_RS09320 (K6973_09320) - 1863411..1863863 (+) 453 WP_138126410.1 universal stress protein -
  K6973_RS09325 (K6973_09325) - 1864029..1865417 (-) 1389 WP_003052568.1 Cof-type HAD-IIB family hydrolase -
  K6973_RS09330 (K6973_09330) - 1865490..1866455 (+) 966 WP_222819285.1 asparaginase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 28748.89 Da        Isoelectric Point: 4.4678

>NTDB_id=527486 K6973_RS09310 WP_003053880.1 1860813..1861595(-) (codY) [Streptococcus dysgalactiae strain DY107]
MPNLLEKTRKITSILQRSVDSLETELPYNTMASRLADIIDCNACIINGGGTLLGYAMKYKTNTDRVEEFFEAKQFPDTYV
KAASRVYDTEANLSVESELTIFPVESKDIYPDGLTTIAPIYGGGMRLGSLIIWRNDNEFSDEDLILVEISSTVVGIQLLN
LQTENLEETIRKQTAVNMAINTLSYSEMKAVAAILGELDGNEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFDKLKEF

Nucleotide


Download         Length: 783 bp        

>NTDB_id=527486 K6973_RS09310 WP_003053880.1 1860813..1861595(-) (codY) [Streptococcus dysgalactiae strain DY107]
ATGCCTAACTTATTAGAAAAAACTCGTAAAATTACGTCTATTCTACAGCGCTCTGTAGATAGCTTGGAGACAGAACTCCC
ATATAATACGATGGCGTCTCGCTTGGCAGATATTATTGACTGTAATGCCTGCATTATCAATGGCGGAGGAACCCTACTTG
GTTATGCCATGAAATATAAAACCAACACAGACCGTGTTGAGGAATTTTTTGAAGCTAAGCAATTTCCAGATACTTATGTC
AAAGCAGCTAGCCGTGTCTACGACACTGAGGCCAATCTTTCAGTGGAAAGTGAATTAACCATTTTTCCTGTGGAATCGAA
AGACATCTATCCAGATGGTTTGACAACGATTGCACCGATTTATGGTGGAGGTATGCGTTTAGGGTCTCTTATCATTTGGC
GCAACGATAATGAGTTTAGTGATGAGGACCTCATCTTGGTTGAAATTTCAAGCACGGTTGTTGGGATTCAGCTGTTAAAC
CTTCAAACAGAAAACCTGGAAGAAACGATCCGCAAGCAAACTGCTGTCAACATGGCTATTAACACCCTATCTTATTCAGA
AATGAAGGCTGTTGCAGCTATTCTTGGTGAATTGGATGGTAACGAAGGTCGTTTAACAGCTTCTGTCATTGCTGACCGTA
TTGGCATTACACGATCTGTGATCGTCAATGCCCTTCGTAAATTGGAAAGTGCTGGTATTATTGAAAGTCGCTCTCTCGGC
ATGAAGGGAACCTACCTCAAAGTTATTAATGAGGGTATTTTTGATAAATTGAAAGAATTTTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-260)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9X9SKT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

66.537

98.846

0.658
  codY Bacillus subtilis subsp. subtilis str. 168

53.036

95

0.504