Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   K6969_RS11870 Genome accession   NZ_CP082205
Coordinates   2471234..2472520 (+) Length   428 a.a.
NCBI ID   WP_171943056.1    Uniprot ID   -
Organism   Streptococcus suis strain AKJ18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2466234..2477520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6969_RS11840 (K6969_11720) - 2466984..2467700 (-) 717 WP_029173670.1 DUF554 domain-containing protein -
  K6969_RS11845 (K6969_11725) - 2467704..2468450 (-) 747 WP_321537422.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  K6969_RS11850 (K6969_11730) prmA 2468452..2469405 (-) 954 WP_029173672.1 50S ribosomal protein L11 methyltransferase -
  K6969_RS11855 (K6969_11735) - 2470001..2470354 (-) 354 WP_029173673.1 ASCH domain-containing protein -
  K6969_RS11860 (K6969_11740) - 2470356..2470826 (-) 471 Protein_2314 DUF3013 family protein -
  K6969_RS11865 (K6969_11745) - 2470829..2471164 (-) 336 WP_029173675.1 MazG nucleotide pyrophosphohydrolase domain-containing protein -
  K6969_RS11870 (K6969_11750) rarA 2471234..2472520 (+) 1287 WP_171943056.1 replication-associated recombination protein A Machinery gene
  K6969_RS11885 (K6969_11765) nrdG 2473001..2473558 (-) 558 WP_171943055.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  K6969_RS11890 (K6969_11770) - 2473745..2474239 (-) 495 WP_024411030.1 GNAT family N-acetyltransferase -
  K6969_RS11895 (K6969_11775) - 2474241..2475485 (-) 1245 Protein_2319 bifunctional metallophosphatase/5'-nucleotidase -
  K6969_RS11900 (K6969_11780) - 2475799..2476920 (+) 1122 WP_015445098.1 IS110 family transposase -

Sequence

Protein


Download         Length: 428 a.a.        Molecular weight: 47326.90 Da        Isoelectric Point: 6.2932

>NTDB_id=527397 K6969_RS11870 WP_171943056.1 2471234..2472520(+) (rarA) [Streptococcus suis strain AKJ18]
MPANLALRMRPKSIDEVIGQEHLVGPGKIIRRMIDANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATTDNQKRL
QEIAEEAKFSGGLVLLLDEIHRLNKTKQDFLLPLLENGNIIMIGATTENPFFSILPAIRSRVQIFELQPLQTSHIRQALE
LALTDSERGFDFPITIEPEALDFLANATNGDLRAAYNSLELAVLSTKESDDGSRHIDLDAVENSLQKSYISMDKNGDAHY
DILSALQKSIRGSDVNASLHYAARLIEAEDLPSLARRLTVIAYEDIGLANPEAQIHTVTALEAAQKIGFPEARILIANVV
VDLALSPKSNSAYLAMDAALADLRKNGHLPIPNHLRDGHYAGSKELGNAIGYQYPHAYPEKWVDQQYLPDKLLNADYFTA
NDTGKYERALGMTQEKIKNLKKNRRQNP

Nucleotide


Download         Length: 1287 bp        

>NTDB_id=527397 K6969_RS11870 WP_171943056.1 2471234..2472520(+) (rarA) [Streptococcus suis strain AKJ18]
ATGCCAGCCAATCTCGCCCTTCGTATGCGGCCAAAATCCATTGATGAAGTCATCGGTCAGGAACACCTGGTCGGTCCTGG
AAAGATTATCCGTCGCATGATTGATGCCAATATGCTGTCGTCTATGATTCTCTACGGTCCGCCAGGGATTGGCAAGACCT
CGATTGCGTCCGCAATTGCTGGCACGACCAAATATGCCTTTCGGACCTTTAATGCCACGACCGACAACCAAAAACGCCTG
CAGGAAATCGCTGAAGAGGCTAAGTTTTCTGGCGGTCTGGTTCTCCTGCTCGATGAAATCCACCGCCTTAACAAGACCAA
GCAGGACTTCCTGCTCCCTCTTTTGGAAAATGGCAATATCATCATGATTGGAGCAACGACGGAAAATCCATTTTTCTCAA
TCCTGCCTGCCATTCGCAGTCGGGTGCAGATTTTTGAGTTGCAACCTTTGCAAACCAGCCATATCCGACAGGCCTTGGAG
TTGGCTTTGACAGACAGCGAACGTGGTTTTGACTTCCCTATTACCATTGAGCCTGAGGCTCTGGATTTCCTAGCCAATGC
TACCAACGGTGACCTTCGTGCCGCCTACAATTCTCTAGAACTGGCTGTGCTTTCGACCAAGGAAAGTGACGACGGTAGCC
GCCACATTGATCTGGACGCCGTAGAAAATAGCCTGCAAAAGTCCTACATCAGCATGGACAAGAACGGCGATGCCCACTAC
GACATCCTCTCCGCTCTGCAAAAATCCATTCGGGGTAGCGATGTCAATGCCAGCCTCCACTACGCCGCTCGTTTGATTGA
GGCGGAAGACCTGCCTAGTCTGGCTCGTCGCTTAACCGTTATTGCCTACGAAGACATCGGCTTAGCCAATCCAGAGGCTC
AGATTCATACGGTGACGGCCCTTGAAGCGGCTCAGAAAATTGGTTTTCCAGAAGCACGGATTTTGATTGCCAATGTGGTA
GTCGATTTGGCTCTTTCTCCCAAGTCCAACTCTGCCTATCTGGCTATGGATGCAGCTCTGGCTGATTTACGGAAAAACGG
CCATCTGCCCATTCCAAATCATCTTCGGGATGGCCACTATGCTGGCAGCAAGGAGCTGGGAAATGCTATTGGCTACCAGT
ATCCACATGCCTATCCTGAAAAATGGGTGGACCAGCAATACCTGCCCGATAAGTTACTGAATGCGGACTACTTCACCGCC
AACGACACCGGCAAATACGAGCGTGCCTTGGGTATGACCCAAGAAAAGATAAAAAATTTGAAAAAAAATAGACGCCAAAA
TCCTTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

AAA C-terminal domain (AAA_assoc_2)

(173-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.569

97.664

0.582