Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   K6969_RS09960 Genome accession   NZ_CP082205
Coordinates   2070199..2070987 (-) Length   262 a.a.
NCBI ID   WP_171943179.1    Uniprot ID   -
Organism   Streptococcus suis strain AKJ18     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 2065199..2075987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6969_RS09935 (K6969_09830) gatA 2066188..2067654 (-) 1467 WP_171943177.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  K6969_RS09940 (K6969_09835) gatC 2067654..2067956 (-) 303 WP_011921930.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  K6969_RS09945 (K6969_09840) - 2068174..2068848 (-) 675 WP_171943178.1 hydrolase -
  K6969_RS09950 (K6969_09845) rplS 2069035..2069382 (-) 348 WP_024376329.1 50S ribosomal protein L19 -
  K6969_RS09955 (K6969_09850) - 2069646..2070197 (-) 552 WP_024377635.1 cysteine hydrolase family protein -
  K6969_RS09960 (K6969_09855) codY 2070199..2070987 (-) 789 WP_171943179.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  K6969_RS09965 (K6969_09860) - 2071459..2072673 (-) 1215 WP_014637482.1 pyridoxal phosphate-dependent aminotransferase -
  K6969_RS09970 (K6969_09865) - 2072828..2073280 (+) 453 WP_029178924.1 universal stress protein -
  K6969_RS09975 (K6969_09870) - 2073407..2074902 (+) 1496 Protein_1945 IS1182 family transposase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29280.33 Da        Isoelectric Point: 4.6078

>NTDB_id=527378 K6969_RS09960 WP_171943179.1 2070199..2070987(-) (codY) [Streptococcus suis strain AKJ18]
MTTLLEKTRNITSILKRSEEQLAEELPYNAIAEHLSAIIDCNSCIINSEGEVLGYHMNYETNNDRVEEFFQNKQFPEGYV
KAVAQVYDTQVNLPVESELTAIPVESRSTYPNGLTTIAPIHVTGIRFGSLIIWRNNEQFHDDDLILVEIAATVVGIQLLN
FQREEDEKNIRRRAAVNMAVNTLSYSEMKAVAAILGELDGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPAIFDEIKKCDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=527378 K6969_RS09960 WP_171943179.1 2070199..2070987(-) (codY) [Streptococcus suis strain AKJ18]
ATGACAACATTATTAGAGAAGACACGGAATATTACTTCTATTTTGAAGCGTTCCGAAGAGCAATTGGCAGAAGAATTGCC
CTACAATGCCATTGCTGAGCATTTATCAGCTATTATTGACTGCAACTCGTGCATCATTAATAGTGAAGGTGAAGTTTTGG
GATACCACATGAACTATGAGACGAACAATGATCGTGTGGAAGAATTTTTCCAAAACAAACAATTCCCAGAAGGATATGTA
AAAGCAGTTGCGCAGGTTTACGATACGCAGGTTAATTTGCCTGTCGAGAGCGAGTTGACTGCCATCCCTGTCGAATCACG
ATCGACTTATCCAAACGGGCTGACAACGATAGCGCCTATCCACGTAACGGGGATTCGTTTTGGTTCGCTTATTATTTGGC
GGAATAATGAGCAGTTTCACGATGATGATTTGATTTTGGTTGAGATTGCGGCAACAGTAGTTGGTATTCAGTTACTTAAT
TTCCAACGGGAAGAAGACGAGAAGAATATCCGTCGTCGTGCGGCAGTTAATATGGCAGTAAATACGCTATCTTACTCAGA
AATGAAGGCAGTTGCAGCTATTTTGGGTGAATTGGATGGCAATGAAGGGCAATTGACTGCTTCTGTGATTGCAGATCGTA
TCGGTATTACACGCTCGGTTATTGTGAATGCACTGCGTAAGTTGGAGAGTGCAGGGATTATTGAAAGTCGTTCTTTGGGA
ATGAAGGGGACTTATTTGAAAGTTCTCATCCCAGCTATTTTTGATGAAATTAAGAAATGTGACTACTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

59.533

98.092

0.584
  codY Bacillus subtilis subsp. subtilis str. 168

52.846

93.893

0.496