Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   K6969_RS09490 Genome accession   NZ_CP082205
Coordinates   1973348..1975084 (-) Length   578 a.a.
NCBI ID   WP_029173396.1    Uniprot ID   -
Organism   Streptococcus suis strain AKJ18     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1968348..1980084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6969_RS09475 (K6969_09370) - 1968991..1970277 (-) 1287 WP_024399122.1 homoserine dehydrogenase -
  K6969_RS09480 (K6969_09375) - 1970382..1971305 (+) 924 WP_029173398.1 polysaccharide deacetylase family protein -
  K6969_RS09485 (K6969_09380) rcrQ 1971531..1973339 (-) 1809 WP_171942826.1 ABC transporter ATP-binding protein Regulator
  K6969_RS09490 (K6969_09385) rcrP 1973348..1975084 (-) 1737 WP_029173396.1 ABC transporter ATP-binding protein Regulator
  K6969_RS09495 (K6969_09390) - 1975278..1975520 (-) 243 WP_002940680.1 KH domain-containing protein -
  K6969_RS09500 (K6969_09395) rpsP 1975542..1975814 (-) 273 WP_024392238.1 30S ribosomal protein S16 -
  K6969_RS09505 (K6969_09400) - 1975939..1976247 (-) 309 WP_029173395.1 DUF4298 domain-containing protein -
  K6969_RS09510 (K6969_09405) pcp 1976247..1976894 (-) 648 WP_029173394.1 pyroglutamyl-peptidase I -
  K6969_RS09515 (K6969_09410) - 1976891..1977646 (-) 756 WP_012775077.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65196.49 Da        Isoelectric Point: 5.1991

>NTDB_id=527374 K6969_RS09490 WP_029173396.1 1973348..1975084(-) (rcrP) [Streptococcus suis strain AKJ18]
MRLVWTYLKKYPKWIALDLLGAFLFVVVNLGLPTFLARMIDQGITKNDVSQLYFWAGMMGLIVLLGIVGRVTLAYAAGKL
TTNIVKDIRNDLYEKIQDYSHHEYEQIGVSSLVARMTNDAFVLMQFSEMVLKLGIITPLMMIASVIMTLVTSPSLAWTVA
VAMPFLVFVIFYVATKTRPLSEKQQKRLDTINQYVRENLMGLRVIRTFTREEFQEERFESVNEEYTNISKKLFNLTGLTE
PLFVQIIIAMIVAIVWFALPPLKDGSLQIGDLVAFIEYSFHALFSFLLFANLFNMYPRMSVSSQRIQEVLDMPISISKNE
DGITETDTRGYLEFENVTFAYPGETESPVLHNISFEAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRILVDGVDVRR
YNLKALRSKIGFIPQKALLFTGTIAENLKYGKMDASLAELHDATDVAQAKEFIESKEEKFDTHLAEGGSNLSGGQKQRLS
IARAIVKQPDIYIFDDSFSALDYKTDAILRSRLKEVTENATVLIVAQRVGTIMDADQIIVLNEGEIVGRGTHNELMESNE
IYREIANSQLNRQSLTEE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=527374 K6969_RS09490 WP_029173396.1 1973348..1975084(-) (rcrP) [Streptococcus suis strain AKJ18]
ATGCGATTAGTTTGGACCTATTTGAAAAAATATCCTAAGTGGATTGCCTTAGACTTGTTGGGGGCCTTCTTGTTTGTAGT
GGTAAACTTGGGGTTGCCGACTTTTTTGGCTAGGATGATTGACCAAGGAATTACAAAGAACGATGTTAGTCAGCTCTATT
TCTGGGCGGGGATGATGGGATTGATTGTCCTGCTCGGGATTGTTGGTCGAGTGACACTTGCCTATGCAGCTGGAAAATTG
ACTACCAATATCGTCAAAGATATTCGAAATGATCTGTATGAGAAAATTCAGGACTATTCTCATCATGAATATGAGCAGAT
TGGTGTTTCTTCTCTAGTTGCTCGTATGACAAATGATGCTTTTGTTCTCATGCAATTCTCTGAAATGGTGTTGAAACTAG
GTATTATTACACCCTTGATGATGATTGCTTCTGTCATCATGACCTTGGTAACCAGTCCGAGCTTGGCCTGGACAGTAGCA
GTAGCCATGCCGTTTCTGGTTTTTGTTATTTTCTACGTGGCAACCAAAACTCGTCCTCTTTCTGAAAAGCAACAAAAACG
TTTGGACACGATCAACCAATATGTTCGTGAAAATCTCATGGGATTACGTGTCATTCGTACCTTTACTCGTGAGGAGTTTC
AAGAGGAGCGCTTTGAGTCGGTCAATGAGGAATATACCAATATTTCCAAAAAGCTCTTTAATCTGACTGGATTGACAGAG
CCTCTCTTTGTCCAGATTATCATTGCTATGATTGTGGCCATTGTCTGGTTTGCCCTGCCTCCTTTGAAAGATGGTAGTTT
GCAGATTGGAGATTTGGTAGCCTTTATCGAATACAGTTTCCACGCGCTTTTCTCTTTCTTGCTCTTTGCTAACTTGTTTA
ACATGTATCCACGTATGTCGGTGTCTAGTCAGCGAATCCAAGAAGTGTTAGACATGCCCATTTCCATTTCTAAGAATGAA
GACGGCATAACCGAAACAGACACTCGTGGTTATTTGGAATTTGAAAATGTAACTTTTGCCTATCCTGGTGAAACGGAATC
GCCTGTGCTGCACAATATTTCCTTCGAAGCTAAGCCTGGTGAAACCATTGCCTTTATTGGTTCAACAGGTTCTGGTAAGT
CTTCCTTGGTCAACTTGATTCCACGTTTCTATGATGTGACACTCGGTCGTATCTTGGTGGACGGTGTGGATGTCAGACGC
TACAATCTAAAGGCACTCCGCAGCAAGATTGGCTTTATTCCGCAGAAAGCTCTGCTATTTACCGGAACTATCGCGGAAAA
CTTAAAGTACGGTAAGATGGATGCTAGTCTTGCAGAACTTCATGATGCGACGGATGTGGCTCAGGCTAAGGAGTTTATCG
AGAGTAAGGAAGAAAAATTCGACACCCACTTGGCAGAGGGCGGCAGCAACCTGTCAGGCGGGCAAAAGCAACGTTTGTCC
ATTGCACGTGCTATTGTCAAACAGCCGGATATTTATATTTTTGATGATTCTTTCTCAGCATTGGATTATAAGACGGATGC
GATTTTGCGGAGTCGTTTGAAGGAAGTGACGGAAAATGCGACGGTGCTGATTGTTGCCCAACGCGTCGGAACCATCATGG
ATGCTGACCAGATCATCGTGCTGAATGAAGGTGAAATCGTTGGCCGTGGCACCCACAATGAATTGATGGAAAGCAATGAG
ATTTATCGAGAAATCGCCAATTCTCAGCTTAACCGTCAATCGTTAACAGAAGAATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(20-280)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.333

100

0.398