Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   K6974_RS05070 Genome accession   NZ_CP082204
Coordinates   1002238..1003980 (+) Length   580 a.a.
NCBI ID   WP_222336681.1    Uniprot ID   -
Organism   Streptococcus suis strain FJSM5     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 997238..1008980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6974_RS05050 (K6974_04995) - 997807..998625 (+) 819 WP_099778912.1 NAD kinase -
  K6974_RS05055 (K6974_05000) - 998625..999518 (+) 894 WP_222336682.1 RluA family pseudouridine synthase -
  K6974_RS05060 (K6974_05005) pta 999536..1000510 (+) 975 WP_002935239.1 phosphate acetyltransferase -
  K6974_RS05065 (K6974_05010) - 1000512..1002251 (+) 1740 WP_099778905.1 ABC transporter ATP-binding protein -
  K6974_RS05070 (K6974_05015) rcrQ 1002238..1003980 (+) 1743 WP_222336681.1 ABC transporter ATP-binding protein Regulator
  K6974_RS05075 (K6974_05020) - 1003964..1004356 (+) 393 WP_029744583.1 PaaI family thioesterase -
  K6974_RS05080 (K6974_05025) mutY 1004534..1005694 (+) 1161 WP_222336680.1 A/G-specific adenine glycosylase -
  K6974_RS05085 (K6974_05030) - 1006377..1007177 (-) 801 WP_029175821.1 XRE family transcriptional regulator -
  K6974_RS05090 (K6974_05035) - 1007402..1007944 (+) 543 WP_024378167.1 hypothetical protein -
  K6974_RS05095 (K6974_05040) - 1008411..1008731 (-) 321 WP_099807150.1 hypothetical protein -

Sequence

Protein


Download         Length: 580 a.a.        Molecular weight: 64525.65 Da        Isoelectric Point: 5.3537

>NTDB_id=527244 K6974_RS05070 WP_222336681.1 1002238..1003980(+) (rcrQ) [Streptococcus suis strain FJSM5]
MRQSSFKELVRLVLHQPLRMSLMLVGTLVQVLLTVYLPILIGQAVDAVLIANGQVLIGILGKMVMVILLNTLVQWYLPLV
TNRLVYGMVADLREQVYVKLHQMPLSYLDRQSVGDLVARFSSDSEQLTNGLLMIFNQFFIGILTIFLTIFTMARLDLTMM
LVVVALTPVSLLVARYIAKKSYGYYRQQTQARGKQSQLLEESISQLTLVQSFNAQEQFTQGFQVVNDQYATYSQQAIFAS
STVNPSTRFINAIIYALLAGLGALRIMAGNFTVGSLTTFLNYASQYSKPFNDISSVLSELQSALACADRLFAILALDSID
DQAERKIDSEELKGAISFDNVSFSYRSDRSLIEQLNIDVKSGQKVAIVGPTGAGKSTMINLLMRFYDVTAGQILLDGVPI
SQYSREDLRRQIGMVLQETWIKSGTIHDNIAYGYPNATRELVIEAAKAANADFFIRQLPQGYDTVLADGGEGLSQGQRQL
LSIARVFVKIPKILILDEATSSIDTRTEILVQEAFAKLMEGRTSFIIAHRLSTIQSADLILVMVDGKIVEQGNHEALMAE
QGVYYQMQTSQQTEEDESVR

Nucleotide


Download         Length: 1743 bp        

>NTDB_id=527244 K6974_RS05070 WP_222336681.1 1002238..1003980(+) (rcrQ) [Streptococcus suis strain FJSM5]
ATGAGACAATCTAGTTTTAAGGAACTGGTCAGATTGGTTTTACACCAGCCCCTTCGAATGTCCTTGATGTTGGTGGGAAC
TTTGGTGCAAGTCCTTCTGACAGTTTATCTGCCTATCTTGATTGGTCAGGCAGTCGATGCAGTATTGATAGCAAATGGTC
AGGTCTTGATTGGTATCTTAGGCAAAATGGTGATGGTTATCTTGCTTAATACGCTGGTGCAATGGTACTTACCTTTGGTA
ACCAATCGCTTGGTTTATGGAATGGTGGCCGACTTGCGTGAACAGGTCTATGTGAAGCTGCACCAGATGCCCCTATCTTA
TCTGGATCGTCAATCAGTCGGTGATTTGGTGGCTCGTTTTTCAAGTGATAGTGAGCAATTAACAAATGGACTCTTGATGA
TTTTCAATCAATTTTTCATTGGTATCTTGACCATTTTTCTAACCATTTTCACTATGGCTAGGCTTGACTTGACGATGATG
TTGGTTGTTGTGGCATTGACTCCAGTTTCTCTGCTTGTGGCACGCTATATCGCTAAGAAATCCTATGGTTATTATAGACA
ACAGACTCAGGCACGTGGGAAGCAATCTCAGCTTTTGGAAGAATCCATCAGTCAATTGACACTGGTTCAATCTTTCAATG
CTCAAGAGCAATTTACGCAAGGTTTTCAAGTTGTGAATGACCAGTATGCGACCTATTCCCAACAGGCCATCTTTGCCTCT
TCAACGGTCAATCCAAGCACGCGGTTTATCAATGCTATTATTTATGCCTTACTTGCAGGACTTGGAGCGCTGAGAATTAT
GGCAGGAAATTTTACAGTGGGCTCTCTGACAACTTTTCTCAATTATGCTAGTCAGTACAGCAAGCCTTTTAATGATATTT
CCTCGGTCCTATCGGAATTGCAGAGCGCTTTAGCTTGTGCAGACAGGCTGTTTGCTATCTTGGCTCTAGATAGCATTGAC
GATCAGGCTGAGCGGAAAATTGATTCAGAGGAGTTGAAGGGAGCTATTTCCTTTGACAATGTGTCTTTCTCCTATAGATC
TGACCGTTCTCTGATAGAACAGTTGAACATTGATGTCAAATCTGGACAAAAGGTAGCCATCGTTGGGCCGACGGGAGCAG
GAAAATCTACCATGATAAACCTCCTCATGCGTTTCTACGATGTGACGGCTGGTCAGATTCTTTTAGATGGGGTTCCGATT
AGCCAATACAGTCGTGAGGATCTCCGCAGACAGATTGGGATGGTTTTACAGGAGACATGGATCAAATCTGGTACCATTCA
TGATAATATTGCCTATGGCTATCCAAATGCCACGCGGGAATTGGTCATTGAGGCGGCTAAGGCAGCTAATGCAGACTTCT
TTATTCGTCAGCTTCCACAGGGTTACGATACGGTTTTGGCAGATGGAGGAGAAGGCTTATCCCAGGGACAACGTCAGCTT
TTGTCTATTGCGCGTGTCTTTGTTAAAATACCTAAAATCCTGATTTTAGATGAGGCGACTTCCTCTATTGATACACGGAC
AGAAATTTTAGTACAGGAAGCATTTGCCAAATTGATGGAAGGACGGACCAGTTTTATTATTGCTCATCGCCTATCAACCA
TTCAATCAGCTGACTTGATTTTGGTCATGGTGGATGGAAAAATTGTTGAACAAGGGAATCATGAAGCGTTGATGGCTGAA
CAAGGCGTTTATTATCAAATGCAAACAAGTCAGCAGACAGAGGAGGATGAAAGTGTTAGATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(22-289)

ABC transporter (ABC_tran)

(353-501)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

38.448

97.759

0.376