Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   K6972_RS01350 Genome accession   NZ_CP082203
Coordinates   230741..233230 (-) Length   829 a.a.
NCBI ID   WP_222759664.1    Uniprot ID   -
Organism   Streptococcus suis strain NJ3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 225741..238230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6972_RS01325 (K6972_01325) dinB 226570..227637 (+) 1068 WP_014637367.1 DNA polymerase IV -
  K6972_RS01330 (K6972_01330) - 227680..228099 (+) 420 WP_222759659.1 Rrf2 family transcriptional regulator -
  K6972_RS01335 (K6972_01335) - 228236..228862 (+) 627 WP_222759661.1 NAD(P)-dependent oxidoreductase -
  K6972_RS01340 (K6972_01340) - 228968..229888 (+) 921 WP_222812661.1 1-phosphofructokinase family hexose kinase -
  K6972_RS01345 (K6972_01345) - 229935..230573 (+) 639 WP_222812663.1 endonuclease III domain-containing protein -
  K6972_RS01350 (K6972_01350) recD/recD2/recDB 230741..233230 (-) 2490 WP_222759664.1 ATP-dependent RecD-like DNA helicase Machinery gene
  K6972_RS01355 (K6972_01355) lepB 233295..233924 (-) 630 WP_011921809.1 signal peptidase I -
  K6972_RS01360 (K6972_01360) rnhC 233934..234824 (-) 891 WP_024400395.1 ribonuclease HIII -
  K6972_RS01365 (K6972_01365) - 234909..235892 (+) 984 WP_222759666.1 Gfo/Idh/MocA family protein -
  K6972_RS01370 (K6972_01370) - 236286..237458 (+) 1173 WP_222759667.1 LysM domain-containing protein -

Sequence

Protein


Download         Length: 829 a.a.        Molecular weight: 92913.84 Da        Isoelectric Point: 4.4974

>NTDB_id=527119 K6972_RS01350 WP_222759664.1 230741..233230(-) (recD/recD2/recDB) [Streptococcus suis strain NJ3]
MNEVYFTGTIDRIIFENPSNFYKILLLEIEETDADYDDYEIIVTGTIADVIEGEDYRFYGNLVTHPKYGQQLQISRYERS
KPTSAGLVKYFSSDHFKGIGRKTAEKIVELYGEDTIDKILAEPEKLTQITGLSSKNMQAFVEKLRLNYGTELILAKLAEY
GIPNKLAFQIQDQYKEKTLQIIEENPYQLVEDVQGLGFTIADRIAENLGIASDSPQRFRAGMLFSLIHRSMETGDTYVEA
RDLLEATLELLEKSRHTELDPAAVAHELTGLIADDKVQQEGTKIFDNSLYFAEHGIHKNLTRLMGKNGFKPFPRADVEAA
IAELESMSSLTYDDIQKEAIVQAITNPLFILTGGPGTGKTTVINGIIAVYAILHKIDLTRNREECPVLLAAPTGRAARRM
NELTGLPSATIHRHLGLVEGQEESYRDDYLDADFIIVDEFSMVDTWLANQLFQNISSQTQVLIVGDAEQLPSVSPGQVLA
DLLKIDKLPSITLERIYRQSDDSTIVTLASQIRQGALPSDFRDKKADRSYFEAQNEQIPALIERIVGAAIKSGIPANEVQ
ILAPMYRGAAGIDQLNTMTQALLNPLEDGELEFLHNEQAFRQGDRVIHLINDAEANVFNGDLGYITDLLPAKYTDSKQDE
ITINFDGSEVTYPRNEWYKITLAYAMSIHKSQGSEFQVVILPITRTSHRMLQRNLVYTAITRSKSKLILLGEISAFDYAV
KNAGTVRKTYLVPRFQGEMAEQDSKESLTENNESKTATATQTQPPAQSDNPKQTEPVTENSQQLSLLDQDQPEKTSGQPR
EYILTVDNLLTIDPMIGIDQADIEEFFKA

Nucleotide


Download         Length: 2490 bp        

>NTDB_id=527119 K6972_RS01350 WP_222759664.1 230741..233230(-) (recD/recD2/recDB) [Streptococcus suis strain NJ3]
ATGAACGAAGTGTATTTTACCGGTACTATTGACCGGATTATTTTTGAAAATCCTAGTAATTTTTATAAAATCCTTCTCCT
TGAAATCGAGGAGACAGACGCAGACTATGATGACTACGAAATTATTGTGACCGGAACGATTGCCGATGTCATTGAAGGAG
AAGACTATCGTTTCTATGGCAATCTGGTCACCCATCCCAAGTATGGTCAGCAGCTGCAAATTTCGCGTTACGAACGCAGC
AAGCCCACTTCTGCCGGACTTGTCAAGTATTTCTCCAGCGACCATTTCAAGGGAATTGGACGTAAAACAGCTGAAAAAAT
CGTTGAGCTCTATGGCGAGGATACCATTGATAAGATTTTAGCTGAACCTGAAAAACTAACCCAAATCACAGGCCTATCCA
GCAAGAACATGCAGGCATTTGTGGAGAAACTCCGCCTCAATTATGGAACCGAGCTAATCTTGGCAAAACTAGCCGAGTAT
GGCATTCCCAATAAATTGGCCTTTCAAATCCAAGACCAGTATAAGGAAAAAACACTTCAGATTATTGAAGAAAATCCCTA
TCAACTGGTCGAAGATGTCCAGGGCCTCGGCTTTACCATTGCCGATAGGATTGCGGAAAATCTAGGAATTGCCAGCGATT
CCCCCCAACGTTTTCGGGCTGGCATGCTCTTTAGCCTCATTCATCGCTCCATGGAAACAGGCGATACCTATGTAGAGGCC
AGAGACTTGCTGGAAGCAACCCTTGAACTGCTGGAAAAATCCCGCCATACAGAGCTGGACCCCGCTGCTGTTGCCCACGA
GTTGACGGGACTGATTGCAGACGACAAGGTACAGCAAGAAGGCACAAAGATTTTTGACAACAGCCTCTACTTTGCCGAAC
ATGGTATCCATAAAAACTTGACCCGCCTGATGGGAAAAAATGGTTTCAAGCCCTTCCCACGCGCAGACGTTGAGGCTGCC
ATAGCAGAGCTGGAAAGTATGTCTTCCCTAACCTACGATGACATTCAAAAAGAAGCCATTGTCCAAGCTATTACCAATCC
GCTTTTCATTCTGACAGGCGGACCAGGAACAGGAAAAACTACGGTTATCAACGGTATTATCGCGGTCTATGCCATCTTGC
ATAAGATTGACCTGACTCGCAACCGAGAAGAATGCCCTGTCCTCCTAGCCGCTCCAACTGGACGAGCAGCCAGACGGATG
AATGAATTGACAGGCCTGCCTTCCGCCACCATCCACCGCCATCTCGGTCTGGTAGAAGGACAGGAAGAATCCTACCGTGA
TGATTATTTGGATGCCGACTTTATCATCGTGGATGAGTTTTCTATGGTAGATACTTGGTTGGCAAACCAGCTCTTCCAGA
ACATCTCCTCCCAAACCCAAGTTCTGATTGTCGGCGATGCGGAGCAATTACCTTCTGTCAGCCCCGGTCAGGTCCTAGCT
GACCTCTTGAAAATCGACAAGCTACCCAGCATCACTCTGGAACGCATCTACCGTCAATCCGATGATTCGACTATTGTTAC
CCTAGCCAGCCAGATTCGCCAAGGGGCCCTGCCTAGCGATTTCCGTGACAAAAAGGCTGACCGCTCCTATTTTGAAGCGC
AAAACGAACAAATTCCAGCTCTGATTGAACGCATTGTCGGCGCAGCTATCAAGTCAGGTATCCCTGCAAACGAAGTCCAA
ATCCTCGCTCCCATGTACCGTGGTGCCGCAGGCATTGACCAACTCAACACCATGACCCAGGCCCTGCTCAATCCCCTAGA
AGACGGAGAGCTGGAATTCCTCCACAACGAGCAGGCCTTCCGCCAAGGCGACCGAGTCATCCACCTTATCAACGATGCTG
AGGCCAATGTCTTCAATGGTGATCTGGGCTATATTACTGACCTCCTGCCTGCCAAGTACACCGACTCCAAGCAGGACGAG
ATTACCATCAACTTCGACGGTAGCGAGGTCACCTATCCCCGTAACGAATGGTACAAGATTACCCTGGCCTATGCCATGTC
CATCCACAAGTCCCAAGGCAGTGAGTTCCAGGTGGTCATCCTTCCCATTACCCGCACCAGCCACCGCATGCTCCAGCGCA
ACCTGGTCTACACCGCCATCACCCGCTCCAAGAGCAAGCTCATCCTCCTAGGCGAAATCTCCGCCTTCGACTACGCCGTC
AAAAACGCCGGCACCGTCCGAAAAACCTATCTGGTCCCACGTTTCCAAGGGGAAATGGCAGAGCAGGACAGCAAGGAAAG
CCTGACTGAAAACAACGAAAGCAAAACAGCTACAGCCACTCAAACCCAGCCCCCTGCCCAGTCAGATAATCCAAAACAAA
CAGAGCCCGTAACAGAAAACAGCCAACAACTGTCCCTTCTTGACCAAGACCAGCCAGAAAAAACAAGTGGACAACCCAGA
GAATATATTCTGACGGTGGACAACCTGCTAACCATCGACCCCATGATCGGCATAGATCAGGCAGATATTGAAGAGTTTTT
TAAAGCATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(663-710)

AAA domain (AAA_30)

(332-529)

Helix-hairpin-helix containing domain (HHH_RecD2)

(148-237)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(575-645)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.402

91.194

0.378