Detailed information NTG0526936

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: I6J05_RS04400
• Genome accession: NZ_CP068073
• Coordinates: 864474..866894 (-)
• Length: 806 a.a.
• NCBI ID: WP_047131822.1
• Uniprot ID: A0A143P8G5
• Organism: Staphylococcus condimenti strain FDAARGOS_1148
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 859474..871894

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6J05_RS04375 (I6J05_04375)	-	859510..860151 (-)	642	WP_047131817.1	O-methyltransferase	-
I6J05_RS04380 (I6J05_04380)	-	860439..860750 (-)	312	WP_047131818.1	DUF1292 domain-containing protein	-
I6J05_RS04385 (I6J05_04385)	ruvX	860773..861201 (-)	429	WP_047131819.1	Holliday junction resolvase RuvX	-
I6J05_RS04390 (I6J05_04390)	-	861204..861467 (-)	264	WP_047131820.1	IreB family regulatory phosphoprotein	-
I6J05_RS04395 (I6J05_04395)	alaS	861536..864166 (-)	2631	WP_047131821.1	alanine--tRNA ligase	-
I6J05_RS04400 (I6J05_04400)	recD2	864474..866894 (-)	2421	WP_047131822.1	ATP-dependent RecD-like DNA helicase	Machinery gene
I6J05_RS04405 (I6J05_04405)	-	866898..867566 (-)	669	WP_047131823.1	tetratricopeptide repeat protein	-
I6J05_RS04410 (I6J05_04410)	mnmA	867674..868786 (-)	1113	WP_047131824.1	tRNA 2-thiouridine(34) synthase MnmA	-
I6J05_RS04415 (I6J05_04415)	-	868789..869928 (-)	1140	WP_047131825.1	cysteine desulfurase family protein	-
I6J05_RS04420 (I6J05_04420)	-	870110..871108 (+)	999	WP_047131826.1	LLM class flavin-dependent oxidoreductase	-
I6J05_RS04425 (I6J05_04425)	-	871144..871350 (-)	207	WP_047131827.1	CsbD family protein	-
I6J05_RS04430 (I6J05_04430)	-	871424..871588 (-)	165	WP_156483151.1	hypothetical protein	-

Sequence

Protein

• Length: 806 a.a.
• Molecular weight: 90919.16 Da
• Isoelectric Point: 4.4085

>NTDB_id=526936 I6J05_RS04400 WP_047131822.1 864474..866894(-) (recD2) [Staphylococcus condimenti strain FDAARGOS_1148]
MSNPTLFDYSMVKGTVEAILFQNKENFYTVLKVDPIETNEEFDSMPTVVGFFPEIAEGDVYTFKGQAVTHPRYGKQLKAE
TFEKELPQTKDAIVSYLSSDLFKGIGKKTAENIVDTLGENAINKILDDEQVLAEVPHLSKKKQKQIAEQIYSNQEVEKIM
IRLHDLGFGPKLSMNIYQVYQVETLTEIEKNPYQLVYDVKGVGFNKADTLAKNLGIEYNDPERLKAGLLYTIEEECIKQG
HTYLPKDYVIEASQDTLSQVHSESIDAQLLEEMIVQLTEEEKLVEADETLSVPSLYYSEVKSVQNLYRIEAHQTKLETIE
QSDLQIHIGEIEDVNNVNYAASQKEALETAINSKVMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYNEDDYPVALA
APTGRAAKRLQESTGLEAMTIHRLIGWSQETKPEDVLENEINAKLIIIDEMSMVDTWLFHQFLNAVPIDAQVILVGDEDQ
LPSVGPGQVFKDLIDSKVVPRVNLTEVYRQQDGSSIIELAHKMKLGQPIDITQRFHDRSFIPCSADQIPDVVNKVVTSAV
KKGYDMSDIQVLAPMYRGSAGIKRLNKVLQDILNPKQEDTREIEFGDVVFRKGDKVLQLVNRPSDNIFNGDIGVIQGIFW
AKENELNKDVLVVDFDGNEITFTKQDMMELTHAYCTSIHKAQGSEFPIVIMPVVKQYYRMLQRPIIYTGLTRAKQSLVFL
GDSQAFDIGMQTYGQVRMTRMAQLLRDYFGTEMSETTNETENDIDTNEIIAEQNSKVIALSEETIFEIDPMIGMGNVTPY
SFANDK

Nucleotide

• Length: 2421 bp

>NTDB_id=526936 I6J05_RS04400 WP_047131822.1 864474..866894(-) (recD2) [Staphylococcus condimenti strain FDAARGOS_1148]
TTGAGCAACCCTACATTATTTGATTATTCAATGGTCAAAGGTACAGTTGAAGCTATTCTTTTTCAAAATAAAGAAAACTT
TTACACTGTATTAAAAGTAGATCCAATCGAGACAAATGAAGAATTTGATAGTATGCCGACCGTTGTAGGGTTCTTTCCTG
AAATTGCGGAAGGAGATGTTTATACTTTTAAAGGTCAAGCTGTCACTCACCCTCGATATGGCAAGCAATTAAAAGCTGAG
ACCTTTGAAAAAGAACTGCCGCAAACTAAAGATGCGATTGTAAGTTATCTCTCAAGTGATTTATTTAAAGGCATCGGGAA
AAAAACAGCAGAAAATATCGTCGACACACTTGGTGAAAATGCGATTAATAAAATTCTTGATGATGAACAAGTATTGGCAG
AAGTACCGCATCTGTCTAAGAAAAAGCAAAAACAAATTGCAGAACAAATTTACAGTAATCAAGAAGTTGAAAAAATCATG
ATTCGTCTGCATGATTTAGGTTTCGGTCCTAAATTATCGATGAATATTTACCAAGTTTACCAAGTTGAAACACTCACTGA
AATTGAGAAGAATCCGTATCAGCTTGTCTATGATGTTAAAGGGGTCGGTTTTAATAAAGCTGATACTTTAGCTAAGAATC
TTGGTATTGAATACAATGATCCTGAACGATTAAAAGCAGGATTATTATATACAATTGAGGAAGAATGTATTAAACAAGGA
CATACGTATTTGCCGAAAGATTATGTGATTGAAGCTTCACAAGATACTTTATCTCAAGTGCATAGCGAATCCATTGATGC
CCAATTGTTGGAAGAGATGATTGTACAGCTGACTGAAGAAGAAAAGTTGGTAGAAGCAGATGAAACACTTTCTGTACCAA
GTTTATATTATTCAGAAGTTAAAAGTGTACAAAATTTATATCGCATTGAAGCACATCAAACAAAACTAGAGACAATTGAA
CAATCAGACCTGCAGATACACATTGGAGAAATTGAAGATGTCAATAATGTAAATTATGCTGCATCTCAAAAAGAAGCACT
TGAAACTGCTATAAATTCTAAAGTCATGCTGTTAACAGGCGGGCCTGGTACAGGTAAAACAACTGTGATTAAAGGTATTG
TAGAATTATATGCTGAAATCCATGGTCTGTCTCTTGATTATGATGATTATAACGAAGATGATTATCCTGTCGCTTTAGCA
GCACCAACAGGCCGAGCTGCTAAAAGATTGCAAGAATCTACGGGATTAGAAGCTATGACGATACATCGATTAATCGGTTG
GAGCCAAGAAACAAAACCAGAAGACGTTCTTGAAAATGAAATCAACGCTAAGCTGATTATTATCGACGAAATGTCTATGG
TCGACACATGGCTGTTCCACCAATTTTTAAATGCCGTTCCAATTGATGCGCAAGTCATCTTAGTAGGAGATGAAGATCAA
TTACCTTCAGTAGGTCCAGGGCAAGTATTTAAAGATTTAATTGATTCTAAAGTAGTGCCGCGTGTGAATCTAACTGAAGT
TTATCGCCAACAAGACGGTTCTAGTATTATTGAATTAGCACATAAAATGAAACTGGGACAGCCAATTGATATTACACAAC
GATTTCATGATCGCAGTTTTATACCATGCAGTGCCGATCAAATACCGGATGTAGTTAATAAAGTGGTAACCTCAGCTGTG
AAAAAAGGTTATGATATGAGTGATATTCAAGTACTTGCACCGATGTACAGAGGCAGTGCTGGTATTAAGCGTCTGAATAA
AGTACTTCAAGACATTTTAAATCCTAAACAAGAAGATACACGTGAAATCGAATTCGGAGATGTTGTTTTTCGAAAAGGCG
ATAAAGTACTGCAATTAGTTAATCGACCAAGCGATAATATTTTTAACGGAGATATTGGCGTCATTCAAGGTATCTTTTGG
GCAAAAGAAAATGAATTGAATAAAGATGTGTTAGTCGTTGATTTTGATGGAAATGAAATTACATTTACCAAACAAGATAT
GATGGAACTTACGCATGCTTATTGTACTTCCATTCATAAAGCGCAAGGTTCAGAGTTTCCAATTGTGATAATGCCGGTAG
TCAAACAATATTACCGCATGCTGCAAAGACCGATTATTTATACAGGATTAACGCGAGCTAAACAATCTTTAGTTTTTCTA
GGCGACAGTCAAGCCTTTGATATTGGTATGCAAACCTATGGTCAAGTGCGGATGACACGTATGGCACAGCTATTGCGCGA
TTATTTCGGTACAGAAATGAGCGAAACAACAAATGAAACAGAAAATGATATAGATACAAACGAGATAATTGCAGAACAAA
ATTCAAAAGTCATTGCGTTATCAGAAGAAACAATATTTGAAATTGACCCGATGATTGGAATGGGTAATGTCACACCTTAT
AGTTTCGCGAATGATAAATAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_30) (339-544)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (585-655)

• Helix-hairpin-helix containing domain (HHH_RecD2) (153-243)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (672-719)

3D structure

• AlphaFold DB: A0A143P8G5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	51.365	100	0.514