Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   I6J07_RS03885 Genome accession   NZ_CP068063
Coordinates   754913..757309 (+) Length   798 a.a.
NCBI ID   WP_103170472.1    Uniprot ID   -
Organism   Staphylococcus equorum strain FDAARGOS_1150     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 749913..762309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J07_RS03865 (I6J07_03870) abc-f 750118..751803 (+) 1686 WP_103170469.1 ribosomal protection-like ABC-F family protein -
  I6J07_RS03870 (I6J07_03875) - 751864..753006 (+) 1143 WP_103170470.1 cysteine desulfurase family protein -
  I6J07_RS03875 (I6J07_03880) mnmA 753007..754119 (+) 1113 WP_002507434.1 tRNA 2-thiouridine(34) synthase MnmA -
  I6J07_RS03880 (I6J07_03885) - 754244..754909 (+) 666 WP_103170471.1 tetratricopeptide repeat protein -
  I6J07_RS03885 (I6J07_03890) recD2 754913..757309 (+) 2397 WP_103170472.1 ATP-dependent RecD-like DNA helicase Machinery gene
  I6J07_RS03890 (I6J07_03895) alaS 757663..760293 (+) 2631 WP_103170473.1 alanine--tRNA ligase -
  I6J07_RS03895 (I6J07_03900) - 760363..760623 (+) 261 WP_002507438.1 IreB family regulatory phosphoprotein -
  I6J07_RS03900 (I6J07_03905) ruvX 760627..761055 (+) 429 WP_002507439.1 Holliday junction resolvase RuvX -
  I6J07_RS03905 (I6J07_03910) - 761072..761404 (+) 333 WP_002507440.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 89772.49 Da        Isoelectric Point: 4.5294

>NTDB_id=526873 I6J07_RS03885 WP_103170472.1 754913..757309(+) (recD2) [Staphylococcus equorum strain FDAARGOS_1150]
MEDPTLFNNSMIKGTVDAILFQNKENFYTVLKVDTIETNEDFNSMPTIVGFFPEIAEGDVYTFKGQVVTHSKYGKQLKAE
TFEKELPQTKEAIISYLSSDLFKGIGKKTAQSIVNKLGENAISDILNDPAVLEKVPSLPKKKQKQIAEQIASNQETEQII
IRLHDLGFGPKLAMAIYQAYLGETLKVVENTPYQLVYDVKGIGFNKADALARNVGIQFNDDERLKAGLLYVLEEECIKQG
HTYLPTNNVMEMTQDMLSQPPAEMIDAQQLINVLQDLVNDTKLIQQENEVAIPSLYYSELKSVQNLYRNFTHTNKLKEIE
QSELLLEIGEIENRNEVTYADSQRDALQTAINTKIMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYQNDDYPVVLA
APTGRASKRLAESTGLEAMTIHRLIGWNQDTQPEDILENEISAKLIIIDEMSMVDTWLFHQFLSAVPIDAQVILVGDEDQ
LPSVGPGQVFKDLIDSKVIPRVNLTEVYRQQDGSSIIELAHRMKLGEAIDITQRFHDRNFIKCTTEQIPTVVEKVVTSAV
NKGYDMSDIQVLAPMYKGSAGIKKLNTVLQDILNPKDKDTREIEFGDVVFRKGDKVLQLVNRPSDNIFNGDIGVIVGIFW
AKENALNKDILVVDFEGNEITFVRKDLLELTHAYCTSIHKSQGSEFPIVIMPIVKQYFRMLQKPILYTGLTRAKQSLIFL
GDPQAFDIGLKTHGQVRMTQLCTFLKTYFNNEVTEDAEDSIAISKTIDADINLTEDNIFKINPMINMGDISPYDFVED

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=526873 I6J07_RS03885 WP_103170472.1 754913..757309(+) (recD2) [Staphylococcus equorum strain FDAARGOS_1150]
ATGGAAGACCCTACATTATTTAACAATTCAATGATTAAAGGAACCGTGGATGCTATTTTATTTCAAAATAAAGAAAATTT
TTATACGGTTTTAAAGGTAGATACAATTGAAACAAATGAAGATTTCAATTCAATGCCTACAATTGTAGGGTTTTTCCCGG
AAATTGCTGAAGGTGATGTCTATACGTTTAAAGGCCAAGTTGTAACACATTCTAAATATGGTAAGCAACTCAAAGCTGAA
ACGTTTGAAAAAGAGTTGCCGCAAACAAAAGAAGCAATCATTAGTTATTTATCCAGCGATCTTTTTAAAGGTATTGGTAA
AAAAACTGCACAAAGTATTGTAAATAAGTTAGGCGAGAATGCCATTAGTGATATATTAAATGATCCTGCTGTTTTAGAAA
AAGTACCGAGTCTACCAAAAAAGAAACAAAAGCAAATCGCAGAACAAATCGCTAGTAATCAAGAAACAGAACAAATCATT
ATACGACTTCACGACTTAGGTTTTGGTCCGAAGCTTGCTATGGCAATATACCAAGCCTATTTAGGTGAGACACTTAAAGT
TGTTGAAAATACACCATACCAATTGGTTTATGATGTAAAAGGAATCGGTTTTAATAAAGCAGATGCTTTAGCACGTAACG
TGGGAATTCAATTTAATGATGATGAACGTCTGAAAGCTGGTTTGTTATATGTTTTAGAAGAAGAATGTATTAAACAAGGC
CATACATATTTACCTACAAATAATGTTATGGAAATGACACAAGATATGTTGTCTCAACCACCAGCAGAAATGATTGATGC
ACAACAACTTATAAATGTATTGCAAGATTTAGTAAATGATACGAAATTAATCCAACAAGAAAATGAAGTTGCTATACCAA
GTTTGTATTATTCAGAGTTGAAAAGTGTTCAAAACTTATATCGCAATTTTACGCATACAAATAAATTAAAAGAAATTGAG
CAATCAGAATTATTGCTTGAAATTGGTGAAATAGAGAACCGTAATGAAGTAACATATGCCGACTCACAAAGAGACGCGCT
ACAAACTGCAATCAATACTAAAATCATGCTACTAACTGGTGGTCCAGGTACTGGTAAAACGACAGTAATCAAAGGTATCG
TAGAGCTATATGCAGAGATTCATGGTTTATCGTTAGACTATGATGATTACCAAAATGACGATTACCCTGTTGTGCTTGCG
GCACCTACCGGCAGAGCATCAAAGCGGCTTGCAGAATCTACAGGATTAGAAGCAATGACGATACATCGGCTCATTGGTTG
GAATCAAGATACACAACCTGAAGATATTTTAGAAAATGAAATATCTGCAAAACTTATTATTATAGATGAGATGTCGATGG
TTGATACATGGCTTTTTCATCAATTTTTGAGTGCAGTACCTATAGACGCACAAGTTATATTAGTAGGTGATGAAGATCAA
TTACCATCTGTTGGTCCTGGACAAGTGTTTAAAGATTTAATCGATTCAAAAGTTATCCCACGTGTCAATTTAACTGAAGT
ATACCGCCAACAAGACGGTTCTAGTATTATTGAGTTGGCACATAGAATGAAATTGGGCGAAGCAATTGATATTACACAGC
GTTTCCATGATCGTAACTTTATCAAATGTACGACTGAACAAATACCCACAGTAGTTGAAAAAGTAGTGACAAGTGCAGTA
AATAAAGGATATGACATGAGTGATATTCAGGTATTAGCACCTATGTATAAAGGTTCCGCAGGTATTAAAAAACTAAATAC
GGTCTTGCAAGATATATTGAACCCTAAAGACAAAGATACTCGAGAAATTGAGTTTGGTGATGTTGTTTTTAGAAAAGGAG
ATAAGGTTTTACAACTTGTGAACCGACCAAGTGATAATATTTTTAATGGTGATATCGGTGTAATCGTAGGTATATTTTGG
GCGAAAGAAAATGCATTAAATAAAGACATACTTGTCGTTGATTTTGAGGGCAATGAAATAACGTTTGTTCGAAAAGATTT
ATTAGAATTAACACATGCATATTGCACATCTATTCATAAGTCTCAGGGTTCTGAGTTTCCTATAGTCATCATGCCAATAG
TCAAGCAATATTTTAGAATGTTACAAAAACCTATTTTATATACAGGGCTTACTCGAGCGAAGCAGTCGCTTATATTTTTA
GGTGACCCACAAGCATTTGATATTGGATTGAAAACACACGGTCAAGTGAGAATGACACAATTATGTACATTTCTGAAAAC
TTATTTCAATAACGAAGTAACTGAAGATGCTGAAGATAGTATTGCAATTAGTAAAACAATTGATGCAGATATCAATTTGA
CTGAAGATAATATCTTTAAAATTAACCCTATGATCAACATGGGAGACATTTCACCATATGACTTTGTAGAAGATTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-718)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

AAA domain (AAA_30)

(339-545)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.314

99.875

0.503