Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   I6J14_RS04005 Genome accession   NZ_CP068057
Coordinates   832926..833792 (-) Length   288 a.a.
NCBI ID   WP_037584927.1    Uniprot ID   A0A380JV50
Organism   Streptococcus dysgalactiae strain FDAARGOS_1157     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 827926..838792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J14_RS03995 (I6J14_03995) pheT 828985..831390 (-) 2406 WP_003050144.1 phenylalanine--tRNA ligase subunit beta -
  I6J14_RS04000 (I6J14_04000) pheS 831600..832643 (-) 1044 WP_115276381.1 phenylalanine--tRNA ligase subunit alpha -
  I6J14_RS04005 (I6J14_04005) endA 832926..833792 (-) 867 WP_037584927.1 DNA/RNA non-specific endonuclease Machinery gene
  I6J14_RS04010 (I6J14_04010) - 833828..834016 (-) 189 WP_003050141.1 DNA-directed RNA polymerase subunit beta -
  I6J14_RS04015 (I6J14_04015) murA 834020..835291 (-) 1272 WP_003050140.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  I6J14_RS04020 (I6J14_04020) - 835356..835592 (-) 237 WP_277997757.1 DUF1146 family protein -
  I6J14_RS04025 (I6J14_04025) - 835921..836337 (-) 417 WP_003050138.1 F0F1 ATP synthase subunit epsilon -
  I6J14_RS04030 (I6J14_04030) atpD 836350..837756 (-) 1407 WP_003050137.1 F0F1 ATP synthase subunit beta -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31876.93 Da        Isoelectric Point: 10.0404

>NTDB_id=526714 I6J14_RS04005 WP_037584927.1 832926..833792(-) (endA) [Streptococcus dysgalactiae strain FDAARGOS_1157]
MLIRKKQKRVLNSFLLILLVLGSSYLAKSDFIASNHPIKQIYRTVLGDKGESSSESKEVHSEVPTEALSASVLTKSIKEQ
LASDIEWNGAGAYIINRNKTDLTASVASLPYANNETKWVQGQKVPTRANALLTKSTRQYRNRYQTDNAYRTFKPAGWHQL
HHLKGNYDHAVDRGHLLGYALVGGLKGFDASTSNPDNIATQLSWANQADKPYSTGQNYYEGLVRRALDKGKRVRYRVTLL
YDGDNLLASGSQLEAKSADGSLAFNVFVPNVQAGLTVDYRTGQIAINP

Nucleotide


Download         Length: 867 bp        

>NTDB_id=526714 I6J14_RS04005 WP_037584927.1 832926..833792(-) (endA) [Streptococcus dysgalactiae strain FDAARGOS_1157]
ATGTTAATAAGGAAAAAACAAAAAAGGGTGCTTAATTCCTTCTTATTGATTTTGTTAGTGTTGGGGTCTAGTTACCTTGC
TAAGAGTGATTTCATAGCTAGCAATCACCCTATTAAGCAAATTTATCGTACCGTTTTGGGAGATAAGGGTGAATCATCAT
CAGAATCAAAAGAAGTCCATAGTGAGGTTCCCACAGAAGCCCTATCCGCTTCTGTCTTAACCAAATCCATTAAGGAACAA
TTAGCTTCCGATATTGAATGGAATGGAGCAGGCGCCTATATTATCAACAGGAACAAAACAGATTTAACCGCAAGCGTAGC
CAGTCTGCCCTATGCCAATAATGAAACCAAATGGGTTCAAGGACAAAAGGTTCCTACTAGAGCTAATGCCTTACTTACTA
AGTCGACACGACAGTATCGGAATCGCTATCAAACGGACAATGCTTATCGTACCTTCAAGCCTGCTGGTTGGCACCAATTA
CATCACTTAAAAGGAAATTATGATCATGCAGTTGATAGAGGACATTTGCTAGGTTATGCTTTAGTTGGTGGACTGAAAGG
TTTTGATGCTTCTACCAGTAATCCTGATAATATTGCCACTCAACTAAGTTGGGCCAATCAAGCAGATAAACCCTATTCGA
CAGGTCAAAATTACTATGAAGGCTTAGTACGTCGTGCATTGGATAAGGGTAAAAGGGTCCGTTATCGTGTTACCTTGCTT
TATGATGGTGATAATCTCTTAGCCAGTGGTAGCCAGTTAGAGGCCAAATCTGCCGATGGGAGTTTAGCATTTAACGTGTT
TGTTCCAAATGTCCAAGCAGGGCTGACGGTTGATTATCGAACAGGACAGATTGCCATCAATCCCTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(122-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380JV50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

62.338

80.208

0.5
  endA Streptococcus pneumoniae D39

62.338

80.208

0.5
  endA Streptococcus pneumoniae R6

62.338

80.208

0.5
  endA Streptococcus pneumoniae TIGR4

62.338

80.208

0.5