Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   I6J17_RS16010 Genome accession   NZ_CP068054
Coordinates   3266319..3268742 (+) Length   807 a.a.
NCBI ID   WP_029142450.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain FDAARGOS_1160     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3261319..3273742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J17_RS15990 (I6J17_15990) - 3262547..3262966 (+) 420 WP_013859764.1 Rrf2 family transcriptional regulator -
  I6J17_RS15995 (I6J17_15995) - 3262987..3264132 (+) 1146 WP_029142451.1 cysteine desulfurase family protein -
  I6J17_RS16000 (I6J17_16000) mnmA 3264148..3265263 (+) 1116 WP_013859762.1 tRNA 2-thiouridine(34) synthase MnmA -
  I6J17_RS16005 (I6J17_16005) - 3265640..3266308 (+) 669 WP_013859761.1 tetratricopeptide repeat protein -
  I6J17_RS16010 (I6J17_16010) recD2 3266319..3268742 (+) 2424 WP_029142450.1 ATP-dependent RecD-like DNA helicase Machinery gene
  I6J17_RS16015 (I6J17_16015) - 3268748..3268900 (-) 153 WP_155116794.1 hypothetical protein -
  I6J17_RS16020 (I6J17_16020) - 3268922..3269362 (-) 441 WP_029142449.1 YndM family protein -
  I6J17_RS16025 (I6J17_16025) - 3269549..3269734 (+) 186 WP_029142448.1 hypothetical protein -
  I6J17_RS16030 (I6J17_16030) - 3269752..3269883 (+) 132 WP_234969463.1 DUF3918 family protein -
  I6J17_RS16035 (I6J17_16035) - 3270122..3271213 (+) 1092 WP_029142447.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 807 a.a.        Molecular weight: 90702.75 Da        Isoelectric Point: 4.8229

>NTDB_id=526631 I6J17_RS16010 WP_029142450.1 3266319..3268742(+) (recD2) [Heyndrickxia coagulans strain FDAARGOS_1160]
MEKQHAMDLFQDQENFIKGKHLATIFHNEQNLYSVIRVRVEETNTGMEEKETVITGYFPRIHEQETYTFFGKMQEHPKFG
PQFQANRFQKDIPNTKQGVVEYLSSDLFNGIGKKTAERIVGVLGENAISKILENPAALDEVPKLATEKAQLIHDTLVEHQ
GLERVMIGLAQYGFGPQIAMRIYQVYEDEALEMIAQNPYRLVDDIKGIGFGRADELGRQLGISGTHPHRIQAGCCYMLEM
ESMQHGHVYVLKEELAQDVKALLEEYQNVEIPVGLIENELVKLQEESKVIMEEDKVYLPSLYFSEKGIVSNIERIMSQTE
YAEQFPESEFLLALGSLEERLGVEYAPSQKEAIQKALMSPMMILTGGPGTGKTTVIKGIVELYGELHGVSLDPQTYKKDE
AFPIVLAAPTGRAAKRMAESTGLPAMTIHRLLGMTGMEDLDDSEDRQVEGKFVIIDEMSMVDTWLANQLLKALPDEIQVI
MVGDEDQLPSVGPGQVLKDLLKSGAIPVVRLTDIYRQKDGSSIIELAHHVKNGRIPENIFQMQADRSFIRCSSGQVAEAV
EKVVKSAKRKGYTAKDIQVLAPMYRGPAGIDRLNSLLQNIFNPNENGARKELKHGDAVYRIGDKVLQLVNQPEHGVYNGD
IGEIVSLFTAKENTEKQDMLIVSFDGIEVTYTKPDFNQITLAYCCSIHKSQGSEFPVVILPVVRSYYRMLRRNLLYTAIT
RSKKILILLGEEPAFRMGVEREDDQKRKTTLCEKLAEALKTEQIEAGTETLLSLTEENWDQVDPMIGMEGITPYTFAEEK
QTAPQAD

Nucleotide


Download         Length: 2424 bp        

>NTDB_id=526631 I6J17_RS16010 WP_029142450.1 3266319..3268742(+) (recD2) [Heyndrickxia coagulans strain FDAARGOS_1160]
TTGGAAAAACAGCATGCGATGGATTTATTCCAGGACCAGGAAAATTTTATAAAAGGAAAGCATCTCGCGACCATTTTCCA
TAACGAGCAAAATTTGTATTCCGTCATCCGTGTGCGGGTTGAAGAGACCAATACCGGGATGGAAGAAAAGGAAACGGTCA
TTACCGGCTATTTTCCGCGCATCCATGAGCAGGAAACGTACACCTTTTTTGGAAAAATGCAGGAACACCCGAAATTCGGC
CCCCAATTCCAGGCAAACCGCTTTCAGAAGGACATTCCCAATACAAAGCAGGGTGTTGTTGAGTATCTTTCCAGTGATTT
ATTCAACGGCATCGGCAAAAAAACGGCGGAGCGGATCGTTGGCGTGCTCGGTGAAAATGCGATCAGCAAAATATTGGAAA
ATCCCGCCGCCCTTGACGAAGTACCAAAACTGGCGACGGAAAAAGCACAGCTGATCCATGATACGTTGGTTGAACACCAG
GGGCTTGAACGTGTCATGATCGGGCTTGCGCAATACGGTTTCGGTCCGCAGATTGCGATGCGCATTTACCAGGTTTACGA
GGATGAGGCGCTCGAAATGATCGCACAAAATCCGTACCGGCTCGTCGATGATATCAAAGGCATCGGTTTCGGGCGGGCCG
ATGAACTCGGCCGGCAGCTCGGCATCAGCGGGACGCATCCGCACCGCATCCAGGCCGGCTGCTGTTACATGCTGGAAATG
GAAAGCATGCAGCATGGCCATGTGTACGTCCTGAAAGAAGAACTTGCGCAGGATGTCAAAGCCCTTTTGGAAGAGTACCA
GAATGTTGAAATCCCGGTCGGCCTGATTGAAAATGAGCTGGTAAAACTGCAGGAAGAGAGCAAAGTGATCATGGAAGAAG
ACAAAGTCTATCTTCCGTCCCTCTATTTTTCGGAAAAAGGAATCGTTTCCAATATTGAGCGGATAATGTCGCAAACCGAG
TATGCGGAACAGTTCCCGGAGTCGGAATTCCTGCTTGCCCTGGGCAGCCTTGAAGAACGGCTCGGCGTCGAGTATGCCCC
GTCGCAAAAGGAAGCCATCCAAAAAGCGCTGATGAGCCCGATGATGATTTTAACGGGCGGACCCGGCACTGGGAAAACAA
CGGTCATTAAAGGGATTGTGGAACTGTACGGCGAATTGCACGGCGTTTCGCTTGACCCGCAAACCTATAAAAAAGATGAG
GCATTTCCGATTGTCCTCGCGGCGCCGACAGGGAGGGCCGCGAAAAGAATGGCGGAGTCAACCGGTCTGCCGGCAATGAC
AATCCACCGCCTGCTCGGCATGACCGGCATGGAGGACCTAGACGATTCAGAGGACCGGCAGGTAGAAGGCAAGTTCGTCA
TTATTGATGAAATGTCGATGGTCGATACATGGCTTGCAAACCAGCTGTTAAAGGCGCTGCCGGATGAAATCCAGGTCATT
ATGGTCGGAGATGAAGACCAGCTGCCGTCCGTCGGTCCGGGCCAGGTGCTGAAAGATTTATTGAAATCGGGTGCCATCCC
GGTTGTCAGGCTGACAGACATATACAGGCAGAAAGATGGTTCTTCGATTATTGAACTGGCCCACCATGTCAAAAATGGGC
GTATTCCGGAAAATATTTTTCAAATGCAGGCAGACCGTTCGTTTATCCGCTGTTCTTCCGGCCAGGTGGCGGAAGCGGTG
GAAAAAGTGGTGAAAAGCGCGAAACGGAAAGGCTATACGGCAAAAGACATTCAGGTGCTGGCGCCGATGTACAGAGGGCC
GGCCGGCATTGACCGTCTGAACAGCCTGTTGCAAAATATTTTTAATCCGAATGAGAACGGCGCCCGCAAAGAGCTGAAGC
ACGGGGACGCGGTTTACCGGATCGGCGATAAGGTGCTGCAGCTTGTCAACCAGCCGGAACACGGAGTGTATAACGGCGAT
ATCGGCGAGATTGTCTCCCTTTTTACCGCAAAAGAAAATACGGAAAAACAAGATATGCTCATCGTTTCTTTTGACGGGAT
TGAAGTGACGTATACGAAGCCTGATTTCAACCAGATTACGCTTGCGTATTGCTGTTCGATCCATAAATCGCAAGGAAGCG
AGTTCCCGGTAGTGATTTTGCCGGTTGTCCGCAGCTATTACCGGATGCTGCGCCGAAACTTGCTGTATACTGCGATCACA
AGAAGCAAAAAAATTTTAATTCTGCTTGGCGAAGAACCGGCTTTCCGGATGGGTGTGGAAAGGGAAGATGACCAAAAACG
GAAGACGACACTGTGTGAAAAACTGGCTGAAGCATTAAAAACGGAACAAATAGAGGCAGGGACGGAGACACTCCTGTCCC
TGACAGAAGAAAATTGGGACCAGGTCGACCCGATGATTGGCATGGAGGGCATTACCCCGTACACTTTCGCGGAAGAAAAG
CAAACGGCTCCCCAAGCGGATTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

AAA domain (AAA_30)

(345-553)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-664)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-728)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

60.549

99.257

0.601