Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   I6J18_RS19330 Genome accession   NZ_CP068053
Coordinates   3830533..3832902 (+) Length   789 a.a.
NCBI ID   WP_040373098.1    Uniprot ID   A0A974NKZ8
Organism   Peribacillus psychrosaccharolyticus strain FDAARGOS_1161     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3825533..3837902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J18_RS19315 (I6J18_19315) - 3827177..3827479 (+) 303 WP_235782423.1 post-transcriptional regulator -
  I6J18_RS19320 (I6J18_19320) secDF 3827754..3830015 (+) 2262 WP_040373099.1 protein translocase subunit SecDF -
  I6J18_RS19325 (I6J18_19325) - 3830186..3830455 (+) 270 WP_201647643.1 lipopolysaccharide assembly LapA domain-containing protein -
  I6J18_RS19330 (I6J18_19330) recJ 3830533..3832902 (+) 2370 WP_040373098.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  I6J18_RS19335 (I6J18_19335) - 3832893..3833405 (+) 513 WP_040373096.1 adenine phosphoribosyltransferase -
  I6J18_RS19340 (I6J18_19340) - 3833775..3835967 (+) 2193 WP_040373094.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  I6J18_RS19345 (I6J18_19345) dtd 3835984..3836433 (+) 450 WP_040373092.1 D-aminoacyl-tRNA deacylase -

Sequence

Protein


Download         Length: 789 a.a.        Molecular weight: 88632.86 Da        Isoelectric Point: 4.7613

>NTDB_id=526580 I6J18_RS19330 WP_040373098.1 3830533..3832902(+) (recJ) [Peribacillus psychrosaccharolyticus strain FDAARGOS_1161]
MLKSKSRWNLQTADQNIVEVLAQELHITPLVATLLVNRGLDTVEAARSFLFIKKQEFHDPYLLKDMDIAVGRIHRAIESQ
EKIRIFGDYDADGVSSTTVMMETLTKLGANVDFYIPNRFSEGYGPNEMAFRLAAEQDVKLMITVDTGISAIEEADLAKEL
GIDYIVTDHHEPSPVLPDALAIIHPKLEDNPYPFKDLAGVGVALKLAHALLGELPEDLLEIAAIGTIADLVPLFGENRLI
AARGIEKLRQTKRPGLIALMKKASIQQQALTEESIGFGLAPRINAVGRLGDADPAVDLLMENDQSLANVAADEIDEINKQ
RQAIVADITEHAINEVETNFPIESNSVLVIGGEGWNAGIVGIVASRLVDRFYRPVIVLSFDPETGLAKGSARSIEGYDLF
KNLSTCRELLPHFGGHPMAAGMTLKIEDVQELRSRLCALADEQLTEEQWTPVTKLDGKTTLADISIQSIEEMNLLAPFGM
GNPKPRILIEQVHLSSVRKIGSNHNHLKLVLEETPDVLDGIGFGLGDTADHISPISAVSVIGELSINEWNNNRKPQIFLK
DICVDHWQLFDHRGSSQVNKWLTETPVKNRKVIVFNESTFKQYPFLETTEDVLYIPNAVMAENVDIDGSSIILMDMPPER
AHIDNLLTDKHPERIYAHFHHQQDNFLATMPTRDHFKWFYAFLAKKGPFDIKKRGDELAKYRGWSRHTIDFISQVFFELD
FVTIENGLIELSSQTNKRDLSESDSYRRKNEQFELEQELVYSSYQQLFEWLNKKVSVSSRPEEEATEWI

Nucleotide


Download         Length: 2370 bp        

>NTDB_id=526580 I6J18_RS19330 WP_040373098.1 3830533..3832902(+) (recJ) [Peribacillus psychrosaccharolyticus strain FDAARGOS_1161]
TTGTTGAAATCAAAATCGCGGTGGAATTTACAGACCGCTGATCAAAATATAGTCGAAGTATTAGCTCAAGAGCTTCATAT
CACACCTTTGGTTGCAACATTATTAGTGAACCGCGGTTTGGATACAGTTGAAGCAGCGCGTTCATTTCTATTTATAAAAA
AACAAGAATTCCATGATCCGTATCTATTAAAAGATATGGACATAGCAGTAGGACGCATTCATAGAGCGATTGAAAGCCAA
GAAAAAATCAGGATTTTCGGTGATTATGATGCAGATGGTGTCAGCAGTACAACCGTCATGATGGAAACCCTGACCAAGCT
TGGTGCCAATGTCGATTTTTATATACCAAACCGTTTTAGTGAAGGATATGGTCCGAATGAAATGGCCTTCAGGCTTGCCG
CTGAACAGGACGTTAAGCTCATGATTACGGTTGATACAGGCATTTCAGCCATTGAGGAAGCAGATCTCGCGAAAGAGCTG
GGCATAGATTATATTGTCACAGATCACCATGAACCGAGTCCTGTCCTTCCTGATGCACTTGCCATCATTCATCCGAAACT
TGAAGATAATCCATATCCGTTTAAGGATTTAGCTGGAGTGGGTGTGGCGCTTAAACTTGCACATGCCCTTCTTGGCGAGC
TTCCGGAGGATTTACTAGAAATAGCCGCGATTGGAACGATTGCTGACCTTGTTCCGCTATTTGGTGAAAACAGACTAATT
GCTGCTCGTGGAATCGAAAAGCTTCGTCAGACAAAACGTCCAGGTCTGATTGCGCTGATGAAAAAAGCGAGTATACAGCA
GCAAGCCCTAACTGAAGAGTCAATTGGTTTTGGTCTCGCACCGCGGATCAATGCTGTTGGTCGTCTGGGAGATGCCGATC
CAGCGGTTGATTTATTAATGGAGAATGATCAAAGCCTGGCAAATGTTGCAGCTGATGAAATTGACGAGATTAATAAACAA
CGTCAGGCGATTGTAGCGGATATTACCGAACACGCGATTAATGAAGTGGAAACGAACTTTCCAATTGAATCAAACAGTGT
GTTAGTGATTGGCGGCGAAGGCTGGAATGCTGGTATTGTCGGCATCGTTGCCTCGCGTTTGGTCGACCGCTTTTATCGTC
CGGTCATCGTCCTTAGCTTTGATCCTGAAACAGGTCTGGCGAAAGGATCTGCTCGGAGTATTGAAGGCTATGATCTGTTT
AAGAATCTATCAACCTGTCGTGAATTGCTTCCGCATTTTGGCGGACACCCGATGGCAGCTGGAATGACATTGAAAATAGA
GGATGTACAAGAACTGCGCAGCCGTCTTTGTGCACTTGCAGATGAGCAGCTGACTGAAGAGCAGTGGACACCGGTTACGA
AATTAGATGGCAAGACGACCCTTGCTGATATCTCCATACAATCGATTGAAGAAATGAATTTATTAGCTCCATTCGGGATG
GGAAATCCTAAACCGCGGATTTTGATTGAACAGGTTCATTTATCATCGGTGCGGAAAATAGGTTCCAACCATAACCATTT
GAAATTAGTTCTTGAGGAAACGCCAGATGTGTTAGATGGTATTGGTTTTGGTCTTGGTGATACCGCCGACCATATCTCAC
CAATCTCGGCAGTTTCTGTTATTGGGGAACTTTCGATTAACGAATGGAACAATAATCGTAAACCGCAGATTTTCTTAAAA
GATATATGCGTGGATCATTGGCAGCTTTTTGATCATCGTGGAAGTAGTCAGGTGAATAAATGGCTGACTGAAACACCAGT
TAAGAATCGAAAAGTCATCGTCTTTAATGAGTCAACATTCAAGCAGTACCCATTCTTAGAAACCACTGAAGATGTTTTAT
ATATCCCTAATGCGGTTATGGCCGAAAATGTGGACATTGACGGAAGCAGTATTATCTTAATGGATATGCCTCCAGAACGA
GCGCATATTGATAACCTGCTGACTGATAAGCATCCCGAACGGATTTATGCTCATTTTCACCATCAGCAGGATAATTTCTT
AGCGACGATGCCAACGAGAGACCATTTTAAATGGTTTTATGCTTTCCTAGCAAAAAAAGGACCATTCGATATTAAAAAGC
GTGGAGACGAACTGGCAAAATACCGTGGCTGGTCGCGTCATACGATTGATTTTATCTCACAGGTGTTTTTTGAACTAGAT
TTTGTTACAATAGAGAATGGGCTTATTGAACTAAGCAGCCAGACGAACAAACGCGACTTAAGTGAATCAGATTCATATAG
ACGTAAGAATGAGCAATTTGAGCTTGAACAAGAGCTTGTATATTCTTCTTATCAGCAATTATTCGAATGGCTTAACAAAA
AGGTATCTGTTTCTAGCAGACCTGAGGAGGAAGCAACAGAATGGATTTAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-771)

DHHA1 domain (DHHA1)

(316-438)

RecJ OB domain (RecJ_OB)

(456-561)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.278

99.24

0.539