Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   DMB75_RS05585 Genome accession   NZ_CP068031
Coordinates   1161629..1164070 (+) Length   813 a.a.
NCBI ID   WP_130547541.1    Uniprot ID   -
Organism   Staphylococcus saccharolyticus strain DVP5-16-4677     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1156629..1169070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMB75_RS05560 (DMB75_005555) - 1156700..1156852 (+) 153 WP_130547545.1 SAS049 family protein -
  DMB75_RS05565 (DMB75_005560) - 1157273..1158268 (-) 996 WP_130547544.1 LLM class flavin-dependent oxidoreductase -
  DMB75_RS05570 (DMB75_005565) - 1158528..1159670 (+) 1143 WP_130547543.1 cysteine desulfurase family protein -
  DMB75_RS05575 (DMB75_005570) mnmA 1159670..1160788 (+) 1119 WP_130547542.1 tRNA 2-thiouridine(34) synthase MnmA -
  DMB75_RS05580 (DMB75_005575) - 1160959..1161627 (+) 669 WP_130547720.1 tetratricopeptide repeat protein -
  DMB75_RS05585 (DMB75_005580) recD2 1161629..1164070 (+) 2442 WP_130547541.1 ATP-dependent RecD-like DNA helicase Machinery gene
  DMB75_RS05590 (DMB75_005585) alaS 1164403..1167033 (+) 2631 WP_130547540.1 alanine--tRNA ligase -
  DMB75_RS05595 (DMB75_005590) - 1167097..1167357 (+) 261 WP_130547539.1 IreB family regulatory phosphoprotein -
  DMB75_RS05600 (DMB75_005595) ruvX 1167360..1167788 (+) 429 WP_130547538.1 Holliday junction resolvase RuvX -
  DMB75_RS05605 (DMB75_005600) - 1167802..1168119 (+) 318 WP_130547537.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 813 a.a.        Molecular weight: 91876.19 Da        Isoelectric Point: 4.8041

>NTDB_id=526404 DMB75_RS05585 WP_130547541.1 1161629..1164070(+) (recD2) [Staphylococcus saccharolyticus strain DVP5-16-4677]
MFDPTLFDYSMIKGTVDAILFQNSDNFYTVLKVDTIETNESFDSMPTVVGFLPNVVEGNVYTFKGQVVEHPRYGKQLKAE
TFEKELPQTKDAIISYLSSGLFKGIGKKTAQNIVNALGEHAINDILSHPEVLENVPSLSKKKQQQIAEQISAIQESEKIM
IRLHGLGFGPKLSMAIYQFYMGETLNVLDENPYQLVYDIKGIGFNKADQLARNIGIAANSPERLKAGLLYTLEEECIKQG
HTYLPDSYVIDTTREMLNSENNEEVISDDILLKMIESLSQEKKLISSNEQVSIPSLYYSELKSVQNLYRIKTNTNKFKKI
EQSDLQIHIGEIESKNHVNYATSQKEALETAMNSKVMLLTGGPGTGKTTVIKGIVELYAEIHGLSLNYDDYNEDDYPVAL
AAPTGRASKRLQESTGLEAMTIHRLIGWNQDTQPQDILDNEINARLIIIDEMSMVDTWLFHQFLSVVPLDAQIIFVGDED
QLPSVGPGQVFKDLIDSKTISRVNLTEVYRQQDGSSIIDLAHRMKMGEPIDITQRYHDRSFIDCSANQIPEVVDKVVKSA
VKKGYNMSDIQVLAPMYKGNSGIKRLNQVLQSILNPKQDDSREIEFGDVVFRKGDKVLQLVNRPNDNIFNGDIGVIVGIF
WAKENALNKDVIVVDFEGNEITFTRQDLLELTHAYCTSIHKAQGSEFPIVIMPIVKQYFKMLQRPIIYTGLTRAKQSLVL
LGETQAFDIGLKTNGQQRLTHLNHLLTSYFGNHNYQNTDSNNSTNSYNDEFGKEDQYTLTEMQTDVQLSESTIYQIDPMI
NMGEITPYDFRER

Nucleotide


Download         Length: 2442 bp        

>NTDB_id=526404 DMB75_RS05585 WP_130547541.1 1161629..1164070(+) (recD2) [Staphylococcus saccharolyticus strain DVP5-16-4677]
ATGTTTGACCCTACACTTTTTGATTATTCTATGATCAAAGGTACGGTTGATGCTATTTTATTTCAAAATAGTGATAACTT
TTATACTGTTTTAAAAGTCGATACAATTGAGACAAATGAATCATTTGATAGCATGCCTACTGTTGTAGGGTTTCTTCCGA
ATGTAGTTGAAGGTAATGTGTATACGTTTAAAGGTCAGGTGGTAGAACATCCAAGATACGGTAAGCAACTTAAAGCTGAA
ACGTTTGAAAAGGAATTACCACAGACTAAGGATGCGATAATCAGTTATTTATCAAGTGGTTTATTTAAAGGAATAGGTAA
AAAAACCGCTCAAAACATTGTGAATGCTTTGGGTGAGCATGCCATTAATGACATTTTAAGTCATCCGGAAGTATTGGAAA
ATGTTCCTAGCTTATCAAAAAAGAAACAACAGCAAATTGCTGAGCAAATTAGTGCTATTCAAGAGTCTGAAAAAATTATG
ATTCGCTTACATGGTTTGGGATTTGGTCCAAAATTATCAATGGCTATATATCAGTTTTATATGGGAGAGACTTTGAATGT
TTTAGATGAAAATCCTTACCAACTCGTTTATGATATTAAAGGAATAGGTTTTAATAAAGCTGATCAACTTGCGCGTAACA
TAGGAATTGCCGCAAATTCACCTGAGAGATTAAAAGCAGGACTACTTTATACTTTAGAGGAAGAATGCATTAAACAAGGT
CATACATATTTACCTGATTCATATGTTATTGATACGACTAGAGAAATGCTTAATAGTGAGAATAACGAAGAAGTGATATC
TGACGACATACTTTTAAAAATGATTGAGAGTTTATCCCAAGAAAAGAAACTTATTTCAAGTAATGAGCAAGTATCTATAC
CTAGTTTATATTATTCAGAATTAAAAAGTGTTCAAAATTTGTATCGAATTAAAACAAACACTAACAAATTTAAAAAAATA
GAACAATCTGATTTACAAATTCATATAGGTGAAATAGAATCAAAAAACCATGTTAATTATGCTACATCACAAAAGGAAGC
GCTTGAAACAGCTATGAATTCAAAGGTCATGCTTTTAACTGGAGGACCAGGTACAGGTAAAACAACAGTTATTAAAGGGA
TTGTAGAATTGTATGCTGAAATTCATGGATTATCATTAAATTATGATGATTATAATGAAGACGATTATCCAGTTGCATTA
GCAGCACCCACAGGTCGTGCATCTAAACGTTTGCAAGAATCAACAGGTTTAGAAGCAATGACAATACACCGCTTAATTGG
TTGGAATCAAGATACGCAGCCTCAAGATATTTTAGATAATGAAATAAATGCTAGATTAATCATTATCGATGAAATGTCAA
TGGTGGATACTTGGCTATTCCATCAATTTTTAAGTGTAGTTCCTTTAGATGCACAGATAATATTTGTTGGTGATGAAGAT
CAGTTACCTTCTGTAGGACCAGGTCAAGTATTCAAAGATCTTATAGACTCAAAAACGATTTCGCGTGTTAATTTAACAGA
AGTATATCGTCAACAAGACGGTTCAAGTATTATAGATTTAGCTCATCGTATGAAAATGGGTGAGCCGATTGATATCACTC
AGCGCTATCATGACCGAAGTTTTATAGATTGTTCAGCTAATCAAATACCTGAAGTTGTAGATAAAGTAGTAAAAAGTGCT
GTTAAAAAAGGATATAACATGAGTGATATTCAAGTATTAGCACCAATGTACAAGGGCAATTCTGGTATTAAACGTTTAAA
TCAAGTGCTTCAGTCAATATTAAATCCTAAACAAGATGACAGCCGAGAAATTGAATTTGGTGACGTTGTATTTAGAAAAG
GGGATAAAGTACTCCAGTTAGTTAATAGACCTAATGATAATATATTTAATGGTGATATAGGTGTTATCGTAGGTATTTTT
TGGGCAAAAGAAAATGCTTTAAATAAAGATGTCATCGTCGTTGATTTCGAAGGTAATGAAATCACGTTTACTCGACAAGA
TTTACTAGAACTCACACATGCATATTGTACGTCTATTCATAAAGCACAAGGATCAGAATTTCCAATTGTTATTATGCCGA
TTGTTAAACAGTATTTCAAAATGCTACAAAGACCTATAATATATACTGGATTGACACGTGCAAAACAATCATTAGTACTT
TTAGGTGAGACTCAAGCATTTGATATAGGTTTAAAAACTAATGGCCAACAAAGGTTAACACATTTAAATCATTTGCTTAC
ATCATATTTTGGTAATCATAACTACCAAAACACTGATTCTAATAATTCAACAAATAGCTATAATGATGAGTTTGGCAAAG
AAGACCAATATACATTAACTGAGATGCAGACTGATGTTCAATTAAGCGAATCGACAATTTATCAAATTGATCCAATGATA
AATATGGGAGAAATAACACCATATGATTTCAGAGAGCGTTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-721)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(586-656)

Helix-hairpin-helix containing domain (HHH_RecD2)

(154-243)

AAA domain (AAA_30)

(340-545)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

48.941

98.77

0.483