Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   JJL46_RS17215 Genome accession   NZ_CP067432
Coordinates   3691633..3692286 (-) Length   217 a.a.
NCBI ID   WP_201133418.1    Uniprot ID   -
Organism   Chryseobacterium indoltheticum strain POL15     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3686633..3697286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJL46_RS17200 (JJL46_17200) katG 3686977..3689256 (+) 2280 WP_201133416.1 catalase/peroxidase HPI -
  JJL46_RS17205 (JJL46_17205) der 3689515..3690825 (+) 1311 WP_076561016.1 ribosome biogenesis GTPase Der -
  JJL46_RS17210 (JJL46_17210) upp 3690904..3691554 (+) 651 WP_201133417.1 uracil phosphoribosyltransferase -
  JJL46_RS17215 (JJL46_17215) comF 3691633..3692286 (-) 654 WP_201133418.1 ComF family protein Machinery gene
  JJL46_RS17220 (JJL46_17220) - 3692556..3694028 (-) 1473 WP_201133419.1 helix-turn-helix domain-containing protein -
  JJL46_RS17225 (JJL46_17225) aceB 3694155..3695729 (+) 1575 WP_201133420.1 malate synthase A -
  JJL46_RS17230 (JJL46_17230) aceA 3695844..3697124 (+) 1281 WP_201133421.1 isocitrate lyase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25586.74 Da        Isoelectric Point: 8.3569

>NTDB_id=526082 JJL46_RS17215 WP_201133418.1 3691633..3692286(-) (comF) [Chryseobacterium indoltheticum strain POL15]
MILDIFFPNRCIHCNRIIDGDLLVCNLCFEQIHFTHFNFFEENYIKEKCKLLFPIENAFALMKFEKENLSRKIIHELKYK
SREKAGKILAEWTAERLDFNKEKPDLLVSVPLHPKKLKERGYNQLHLFTETLSRFYGIPFSHNLIKRNHYSKAQALKDKQ
HRLETQNIFSITENITDKHILLIDDVFTTGNTLSSIAWEILKTGNNKVSVLVMAMDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=526082 JJL46_RS17215 WP_201133418.1 3691633..3692286(-) (comF) [Chryseobacterium indoltheticum strain POL15]
ATGATTTTAGATATTTTCTTTCCGAATCGTTGCATTCATTGTAACCGGATTATTGACGGTGATTTACTTGTCTGCAATCT
TTGCTTTGAACAAATTCATTTTACGCATTTCAATTTTTTTGAGGAAAATTATATTAAAGAGAAATGTAAACTTCTTTTTC
CTATCGAAAATGCTTTTGCATTAATGAAGTTTGAAAAGGAAAATTTAAGTAGAAAAATCATTCATGAATTAAAATATAAA
AGCCGTGAAAAAGCAGGAAAGATTTTGGCAGAATGGACAGCGGAGCGTTTAGATTTCAATAAAGAAAAACCGGATTTATT
AGTTTCTGTTCCGTTGCATCCGAAGAAGCTGAAGGAAAGAGGTTATAATCAACTGCATTTGTTTACAGAAACATTATCGA
GGTTTTATGGGATTCCTTTTAGTCATAATTTAATTAAAAGAAATCATTACTCAAAAGCTCAGGCATTGAAAGACAAGCAA
CATCGTCTGGAAACTCAGAATATTTTTTCAATTACCGAAAACATTACAGATAAACATATTTTATTAATAGATGATGTTTT
CACCACAGGAAATACACTGTCTTCCATTGCCTGGGAAATCCTGAAAACAGGAAATAATAAAGTGAGTGTTTTGGTAATGG
CGATGGACGAGTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

56.221

100

0.562