Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   JJL48_RS06400 Genome accession   NZ_CP067416
Coordinates   1284410..1286800 (+) Length   796 a.a.
NCBI ID   WP_065381225.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain TET2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1279410..1291800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJL48_RS06380 (JJL48_06380) sal(A) 1279717..1281342 (+) 1626 WP_070373287.1 ABC-F type ribosomal protection protein Sal(A) -
  JJL48_RS06385 (JJL48_06385) - 1281402..1282550 (+) 1149 WP_070373288.1 cysteine desulfurase family protein -
  JJL48_RS06390 (JJL48_06390) mnmA 1282543..1283652 (+) 1110 WP_070373289.1 tRNA 2-thiouridine(34) synthase MnmA -
  JJL48_RS06395 (JJL48_06395) - 1283739..1284407 (+) 669 WP_065381226.1 tetratricopeptide repeat protein -
  JJL48_RS06400 (JJL48_06400) recD2 1284410..1286800 (+) 2391 WP_065381225.1 ATP-dependent RecD-like DNA helicase Machinery gene
  JJL48_RS06405 (JJL48_06405) alaS 1287050..1289680 (+) 2631 WP_065381224.1 alanine--tRNA ligase -
  JJL48_RS06410 (JJL48_06410) - 1289748..1290017 (+) 270 WP_037588397.1 IreB family regulatory phosphoprotein -
  JJL48_RS06415 (JJL48_06415) ruvX 1290010..1290438 (+) 429 WP_025904238.1 Holliday junction resolvase RuvX -
  JJL48_RS06420 (JJL48_06420) - 1290458..1290763 (+) 306 WP_025904237.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 796 a.a.        Molecular weight: 90424.60 Da        Isoelectric Point: 4.5973

>NTDB_id=525989 JJL48_RS06400 WP_065381225.1 1284410..1286800(+) (recD2) [Mammaliicoccus sciuri strain TET2]
MENLSLFDLSHVKGEVIRILFQNSDNYYTVIKVDVMDSNEDFDQEVTIVGYLPQIVEGETYLFKGKVTNHPKYGKQLQAE
TFEKELPQTKQGVIHYLSSDLFKGIGKKTAETIVDKLGEDALQKIIDDPDVLKEIPKLNKQKRDTIAESIRENQAIERIM
IKLNELGFGPKLAMAIYQFYKEETLNIIKQSPYRLVMDINGIGFQRADQIAEQVGISKDHHDRLVAGVSYFLDQQSLQNG
HTFLPVDILVNGAYELLNHNQPEVVNKDQINGVIIEMSEENKLIIENDNCFLPSLYYSEAKSVQIIHRLYQHQDELKEIE
KSDLQLHIGQIEDMNDVSYADGQKLALETAINHKMMLLTGGPGTGKTTVIRGICELYSEIHGVSLNYDDYQEGTDFPIVL
AAPTGRAAKRLSESTGLEAMTIHRLIGWSKDTQPDDVLDNDIHAHLIILDEMSMVDTWLMYQFLRAVPDYAQIIFVGDED
QLPSVGPGQIFKDLIDSKVIPRVNLTEVYRQQEGSSIIDLAHKIKNGLPVSINEKHHDRSFIPCSSNQIATVVEKVVQGA
VNKGYNMQDIQVLAPIYRGPAGINKLNELLQDILNPKDEDTRFLQYGDIEYRENDKVLQLINRPDDNVFNGDIGVVTGVY
KAEENALGKDVVIVDYEGNDITYTKQDLSEITHAYCCSIHKSQGSEFPIVIMPIVRQYFRMLQKNILYTGLTRAKQSLVV
CGEEQAFNQGIQTLGHERMTSFDTKLKMYFDTDVETDTESETETIQTKHIILTEDNMFEIDPMINMNDKSPYDFMK

Nucleotide


Download         Length: 2391 bp        

>NTDB_id=525989 JJL48_RS06400 WP_065381225.1 1284410..1286800(+) (recD2) [Mammaliicoccus sciuri strain TET2]
TTGGAAAACTTATCTTTATTTGATCTTTCACATGTTAAAGGTGAAGTTATTAGAATTCTTTTTCAAAACAGTGATAACTA
TTATACCGTTATTAAAGTCGATGTGATGGATTCAAATGAAGATTTTGATCAAGAAGTCACAATTGTTGGTTACTTACCTC
AAATAGTTGAAGGAGAAACGTACCTTTTCAAAGGTAAAGTAACAAACCATCCGAAATACGGTAAACAACTACAAGCTGAA
ACATTTGAAAAAGAATTACCACAAACAAAACAAGGTGTTATCCATTACTTATCGAGTGATTTATTTAAAGGTATTGGTAA
AAAAACAGCAGAAACAATAGTGGACAAGCTAGGTGAAGATGCACTTCAGAAAATTATAGACGACCCAGATGTCCTTAAAG
AAATACCGAAACTCAACAAGCAAAAAAGAGATACGATTGCTGAATCCATTCGTGAAAATCAAGCAATTGAACGAATTATG
ATTAAACTTAATGAACTTGGTTTTGGCCCGAAACTCGCGATGGCGATTTATCAATTTTATAAAGAAGAAACACTTAATAT
TATTAAACAATCTCCATATCGTTTAGTGATGGATATTAATGGTATAGGTTTTCAAAGAGCTGACCAAATAGCTGAACAAG
TAGGGATTTCTAAAGACCATCATGACCGACTTGTAGCGGGTGTCAGTTACTTTTTAGACCAGCAATCATTACAGAATGGT
CACACATTTTTACCTGTTGATATATTGGTTAACGGTGCATATGAATTGTTAAATCATAATCAACCTGAAGTTGTAAATAA
AGATCAGATAAATGGTGTCATTATAGAAATGAGTGAAGAAAATAAACTTATTATCGAAAATGATAATTGTTTTTTACCTT
CACTTTATTATTCAGAAGCGAAAAGTGTGCAAATCATTCATAGACTTTATCAACACCAAGATGAACTTAAAGAAATTGAG
AAAAGTGATCTTCAATTACATATAGGACAAATTGAAGATATGAATGATGTCTCATATGCAGATGGGCAAAAATTAGCGTT
AGAAACAGCTATTAATCATAAAATGATGCTTTTAACAGGTGGACCTGGTACAGGTAAGACGACCGTTATTCGAGGCATTT
GTGAGTTGTACTCTGAAATACATGGTGTGAGTTTAAATTATGATGATTATCAAGAAGGAACAGACTTTCCAATTGTATTA
GCAGCACCGACTGGTCGAGCAGCAAAACGTTTAAGTGAATCAACAGGACTAGAAGCGATGACGATTCATAGATTAATTGG
TTGGAGTAAAGATACGCAACCGGATGATGTGTTAGATAATGATATTCATGCCCATTTAATCATTCTAGATGAAATGTCTA
TGGTAGATACATGGTTAATGTATCAATTTTTAAGAGCAGTCCCTGACTATGCCCAAATCATATTTGTAGGTGATGAAGAT
CAATTACCATCAGTTGGCCCGGGTCAGATTTTTAAAGATTTGATTGATTCTAAAGTGATACCGAGAGTGAACTTAACAGA
AGTTTATAGACAACAAGAAGGATCATCTATCATAGACTTGGCGCATAAAATAAAAAATGGTTTACCAGTTTCTATCAATG
AAAAACATCACGACCGCTCATTTATTCCGTGCAGTAGTAATCAAATTGCGACAGTTGTAGAAAAGGTTGTACAAGGCGCG
GTTAATAAAGGGTATAATATGCAAGATATTCAAGTACTAGCCCCAATATATCGTGGACCAGCTGGTATTAATAAATTGAA
TGAATTATTGCAAGATATATTAAATCCGAAAGATGAAGATACAAGATTCCTTCAATATGGAGATATTGAATATCGTGAAA
ATGATAAAGTACTTCAACTTATAAATCGTCCAGATGATAATGTATTTAATGGTGATATTGGTGTAGTAACAGGTGTTTAT
AAAGCAGAAGAAAATGCACTTGGTAAAGATGTTGTCATTGTGGATTATGAAGGGAATGACATAACATATACTAAACAAGA
TTTATCAGAAATTACACATGCTTATTGCTGTTCAATTCATAAATCACAAGGCTCGGAATTCCCAATAGTCATCATGCCTA
TCGTCAGACAATACTTTAGAATGTTACAAAAAAACATTCTATATACTGGACTAACACGTGCGAAACAATCACTTGTCGTG
TGCGGTGAAGAACAAGCCTTTAACCAAGGTATCCAAACACTAGGTCATGAGAGAATGACATCGTTTGATACAAAATTAAA
AATGTATTTCGATACGGATGTTGAAACGGATACTGAGTCTGAAACAGAAACTATACAAACGAAACATATTATTTTAACTG
AAGATAATATGTTTGAAATCGATCCGATGATTAATATGAATGATAAATCACCATATGATTTTATGAAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(339-545)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-721)

Helix-hairpin-helix containing domain (HHH_RecD2)

(152-243)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(586-644)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.627

100

0.501