Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   T15_RS10815 Genome accession   NC_022665
Coordinates   2161927..2163213 (+) Length   428 a.a.
NCBI ID   WP_023371814.1    Uniprot ID   -
Organism   Streptococcus suis T15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2156927..2168213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  T15_RS10785 (T15_2163) - 2157128..2158387 (-) 1260 WP_023371804.1 hypothetical protein -
  T15_RS10790 (T15_2164) - 2158401..2159147 (-) 747 WP_023371806.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  T15_RS10795 (T15_2165) prmA 2159149..2160102 (-) 954 WP_023371808.1 50S ribosomal protein L11 methyltransferase -
  T15_RS10800 (T15_2167) - 2160695..2161048 (-) 354 WP_023371810.1 ASCH domain-containing protein -
  T15_RS10805 (T15_2168) - 2161050..2161520 (-) 471 WP_014638803.1 DUF3013 family protein -
  T15_RS10810 (T15_2169) - 2161522..2161857 (-) 336 WP_023371812.1 MazG nucleotide pyrophosphohydrolase domain-containing protein -
  T15_RS10815 (T15_2170) rarA 2161927..2163213 (+) 1287 WP_023371814.1 replication-associated recombination protein A Machinery gene
  T15_RS10825 (T15_2171) nrdG 2163694..2164251 (-) 558 WP_023371816.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  T15_RS10835 (T15_2172) - 2164438..2164932 (-) 495 WP_023371818.1 GNAT family N-acetyltransferase -
  T15_RS10840 (T15_2173) - 2164934..2166280 (-) 1347 WP_023371820.1 bifunctional metallophosphatase/5'-nucleotidase -
  T15_RS12035 (T15_2174) - 2166282..2166416 (-) 135 WP_002939130.1 hypothetical protein -

Sequence

Protein


Download         Length: 428 a.a.        Molecular weight: 47355.96 Da        Isoelectric Point: 6.3758

>NTDB_id=52569 T15_RS10815 WP_023371814.1 2161927..2163213(+) (rarA) [Streptococcus suis T15]
MPANLALRMRPKSIDEVIGQEHLVGSGKIIRRMIDANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATTDNQKRL
QEIAEEAKFSGGLVLLLDEIHRLNKTKQDFLLPLLENGNIIMIGATTENPFFSILPAIRSRVQIFELQPLQTSHIRQALE
LALTDSERGFDFPITIEPEALDFLANATNGDLRAAYNSLELAVLSTKECDDGSRHIDLDAVENSLQKSYISMDKNGDAHY
DILSALQKSIRGSDVNASLHYAARLIEAEDLPSLARRLTVIAYEDIGLANPEAQIHTVTALEAAQKIGFPEARILIANVV
VDLALSPKSNSAYLAMDAALADLRKNGHLPIPNHLRDGHYAGSKELGNAIGYQYPHAYPEKWVDQQYLPDKLLHADYFTA
NDTGKYERALGMTQEKIKNLKKNRRQNP

Nucleotide


Download         Length: 1287 bp        

>NTDB_id=52569 T15_RS10815 WP_023371814.1 2161927..2163213(+) (rarA) [Streptococcus suis T15]
ATGCCAGCCAATCTCGCCCTTCGTATGCGGCCCAAATCCATTGATGAAGTCATCGGTCAGGAACACCTGGTCGGTTCTGG
AAAGATTATCCGCCGCATGATTGATGCCAATATGCTGTCGTCTATGATTCTCTACGGTCCGCCAGGGATTGGCAAGACCT
CGATTGCGTCCGCAATTGCTGGCACGACCAAATATGCCTTTCGGACCTTTAATGCCACGACCGACAACCAAAAACGCCTG
CAGGAAATCGCTGAAGAGGCTAAGTTTTCTGGCGGTCTGGTTCTCCTGCTCGATGAAATCCACCGCCTTAACAAGACCAA
GCAGGATTTCCTGCTCCCTCTTTTGGAAAATGGCAATATCATCATGATTGGAGCAACGACGGAAAATCCATTTTTCTCTA
TTTTACCCGCCATTCGCAGTCGAGTGCAGATTTTTGAATTACAACCTTTGCAAACCAGCCATATCCGACAGGCCTTGGAG
TTGGCTTTGACAGACAGCGAACGTGGTTTTGACTTCCCTATTACCATTGAGCCTGAGGCTCTGGATTTTCTGGCAAATGC
GACCAACGGTGACCTTCGTGCCGCCTACAATTCGCTAGAACTAGCTGTACTTTCGACCAAGGAATGTGACGACGGTAGCC
GCCACATTGATCTGGACGCCGTGGAAAATAGCCTGCAAAAGTCCTACATCAGCATGGACAAGAACGGCGATGCCCACTAC
GACATCCTCTCCGCCCTGCAAAAATCCATTCGGGGTAGCGATGTCAATGCCAGCCTCCACTACGCCGCTCGTTTGATTGA
GGCCGAAGATCTGCCTAGTCTGGCTCGTCGCTTGACGGTCATTGCCTACGAAGACATCGGCTTGGCCAATCCAGAGGCTC
AGATTCATACGGTGACGGCCCTTGAAGCCGCCCAGAAAATTGGCTTTCCAGAAGCACGGATTTTGATTGCCAATGTGGTA
GTCGATTTGGCTCTTTCTCCCAAGTCCAATTCTGCCTATCTGGCTATGGATGCAGCTCTGGCTGATTTGCGAAAGAACGG
TCATCTGCCCATTCCAAATCACCTGCGAGACGGTCATTATGCTGGTAGTAAGGAGCTGGGAAATGCCATTGGTTACCAGT
ATCCCCATGCCTATCCTGAGAAATGGGTGGACCAACAATACCTGCCTGATAAGTTACTTCATGCGGACTACTTCACTGCC
AATGACACCGGCAAATATGAGCGTGCCTTGGGCATGACACAAGAAAAGATAAAAAATTTGAAAAAAAATAGACGCCAAAA
TCCTTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

AAA C-terminal domain (AAA_assoc_2)

(173-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.091

97.664

0.577

Multiple sequence alignment