Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   JJC02_RS10585 Genome accession   NZ_CP067346
Coordinates   2219146..2220978 (-) Length   610 a.a.
NCBI ID   WP_227858211.1    Uniprot ID   -
Organism   Clostridioides sp. ES-S-0054-01     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2214146..2225978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJC02_RS10555 (JJC02_10570) - 2214538..2215164 (-) 627 Protein_2014 invasion-associated protein P60 -
  JJC02_RS10560 - 2215161..2215684 (-) 524 Protein_2015 ATP-binding protein -
  JJC02_RS10565 (JJC02_10580) - 2215772..2216977 (+) 1206 Protein_2016 IS256 family transposase -
  JJC02_RS10570 (JJC02_10585) - 2217200..2217453 (-) 254 Protein_2017 hypothetical protein -
  JJC02_RS10575 (JJC02_10590) - 2217474..2217788 (-) 315 WP_227858209.1 YdcP family protein -
  JJC02_RS10580 (JJC02_10595) - 2218023..2218289 (-) 267 WP_227858210.1 hypothetical protein -
  JJC02_RS10585 (JJC02_10600) rcrQ 2219146..2220978 (-) 1833 WP_227858211.1 ABC transporter ATP-binding protein Regulator
  JJC02_RS10590 (JJC02_10605) - 2220971..2223217 (-) 2247 WP_227858212.1 ABC transporter ATP-binding protein -
  JJC02_RS10595 (JJC02_10610) - 2223285..2223746 (-) 462 WP_227858213.1 MarR family winged helix-turn-helix transcriptional regulator -
  JJC02_RS10600 (JJC02_10615) - 2224048..2224614 (-) 567 WP_227858214.1 carbonic anhydrase -
  JJC02_RS10605 (JJC02_10620) - 2225303..2225641 (+) 339 WP_227450047.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 67861.49 Da        Isoelectric Point: 5.4486

>NTDB_id=525555 JJC02_RS10585 WP_227858211.1 2219146..2220978(-) (rcrQ) [Clostridioides sp. ES-S-0054-01]
MSRMGKGPMGKSMGAGQKANDFKGTMRKLIAYLSKFKISIILVIVFAIGSASFSIVGPKILGKATTKIFEGLVSKVSGGN
VGVDFNSIGKILAFLLFLYLISALFSFVQGFIMSGISQKVSYNLRKEISVKLDRLPMKYFDTKTHGEILSRITNDIDTLS
QSLNQSMTQLITSVTTMIGVLIMMLSISGIMTLVAILILPISMFVISRIVKKSQKYFRSQQEYLGNVNGQVEETYSGQTI
VKAFNREDEVIEEFDKLNDSLYNSAWKSQFLSGIMQPLMMFIGNLGYVMVSILGGWLAIKKTIEVGDIQSFIQYVRNFTQ
PMTQLAQVANLLQSTAAASERVFEFLEEEEEEQIAENAVSIDGLEGKIDFENVNFGYNPNKTIINDFSVNVKPGQKVAIV
GPTGAGKTTIVKLLMRFYDVNSGSILIDGHNIKDFNRSELREMFGMVLQDTWLFSGSIMENIRYGKLNATDEEVIEAAKS
AHVHRFIKTLPDGYNMKLNEEASNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEVLIQKAMDNLMEGRTSFVIA
HRLSTIRDADMILVMNDGDIVEQGNHEELLKEGGFYANLYNSQFEEDEAM

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=525555 JJC02_RS10585 WP_227858211.1 2219146..2220978(-) (rcrQ) [Clostridioides sp. ES-S-0054-01]
ATGAGTAGAATGGGAAAAGGCCCTATGGGAAAATCTATGGGAGCAGGGCAAAAAGCAAATGATTTTAAAGGAACTATGCG
AAAACTAATTGCATATTTATCTAAGTTTAAAATATCAATAATTTTGGTAATTGTATTTGCTATTGGGAGTGCATCATTTT
CTATAGTAGGTCCAAAAATCTTAGGTAAGGCAACTACAAAGATATTTGAAGGATTAGTAAGCAAAGTTTCTGGAGGAAAT
GTAGGTGTAGATTTTAATTCAATTGGAAAAATCTTAGCATTTTTACTTTTCCTTTATTTGATAAGTGCATTATTCTCTTT
TGTGCAAGGATTCATAATGAGTGGAATTTCCCAAAAAGTATCCTATAATTTAAGAAAAGAGATTTCGGTAAAATTGGATA
GATTACCAATGAAATATTTTGATACTAAGACACATGGTGAAATATTATCAAGAATTACGAATGATATAGATACCTTAAGT
CAAAGTTTGAATCAAAGTATGACACAACTTATAACATCAGTGACAACTATGATAGGTGTTTTGATAATGATGTTATCTAT
AAGTGGGATTATGACACTGGTAGCAATTTTAATATTGCCAATATCAATGTTTGTAATTTCAAGAATAGTAAAGAAATCAC
AAAAATACTTTAGGTCTCAACAAGAATATTTAGGAAATGTAAATGGTCAAGTTGAAGAAACTTATAGTGGTCAAACAATA
GTAAAAGCATTTAATCGTGAAGATGAGGTAATTGAAGAGTTTGATAAATTAAATGATAGTTTGTATAATTCAGCATGGAA
ATCTCAATTTTTATCAGGTATAATGCAACCACTTATGATGTTTATTGGAAACTTAGGTTATGTAATGGTATCAATCTTAG
GAGGTTGGCTAGCAATTAAGAAAACAATTGAGGTTGGGGATATACAGTCATTTATACAATATGTAAGAAACTTTACACAA
CCTATGACTCAACTTGCACAGGTTGCTAATTTACTACAATCAACAGCAGCAGCCTCTGAAAGAGTATTTGAGTTTTTAGA
AGAGGAAGAAGAAGAGCAAATTGCTGAAAATGCAGTTTCAATAGATGGTTTAGAAGGCAAAATTGATTTTGAAAATGTCA
ACTTTGGATATAACCCAAACAAGACTATAATAAATGATTTTTCAGTAAATGTTAAACCAGGTCAAAAAGTTGCCATTGTT
GGGCCTACAGGAGCAGGGAAGACTACAATAGTTAAACTTTTGATGAGATTTTATGATGTTAATAGTGGTTCAATATTGAT
TGATGGTCATAATATTAAAGATTTCAATCGTAGTGAACTTAGAGAAATGTTTGGTATGGTTCTCCAAGATACATGGTTAT
TTAGTGGTTCTATTATGGAAAACATAAGATACGGTAAGCTTAATGCTACAGATGAAGAAGTTATAGAGGCTGCTAAATCT
GCACATGTTCATAGATTTATCAAGACATTACCAGATGGATATAATATGAAATTAAATGAAGAAGCAAGTAACGTTTCTCA
AGGTCAAAAACAATTATTAACTATAGCTCGTGCTATTTTAGCTGACCCTAAAATCTTAATATTGGATGAAGCTACAAGTT
CTGTAGATACTAGAACAGAAGTACTGATTCAAAAGGCTATGGATAATCTTATGGAAGGTAGAACAAGTTTTGTTATAGCC
CACAGATTATCAACTATACGTGATGCTGATATGATTCTTGTAATGAATGATGGAGATATAGTTGAACAAGGAAATCATGA
GGAACTTCTAAAAGAAGGTGGATTCTATGCTAATCTTTACAATTCTCAATTTGAAGAAGATGAAGCAATGTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(40-322)

ABC transporter (ABC_tran)

(385-533)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.525

96.721

0.498