Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   JJC01_RS08580 Genome accession   NZ_CP067345
Coordinates   1880122..1881954 (+) Length   610 a.a.
NCBI ID   WP_227434881.1    Uniprot ID   -
Organism   Clostridioides sp. ES-S-0010-02     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1875122..1886954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJC01_RS08560 (JJC01_08550) aroD 1875264..1876031 (+) 768 WP_227434885.1 type I 3-dehydroquinate dehydratase -
  JJC01_RS20170 - 1876052..1876129 (+) 78 WP_413927138.1 GTP-binding protein -
  JJC01_RS08565 (JJC01_08555) - 1876483..1877049 (+) 567 WP_227434884.1 beta-class carbonic anhydrase -
  JJC01_RS08570 (JJC01_08560) - 1877354..1877815 (+) 462 WP_227434883.1 MarR family winged helix-turn-helix transcriptional regulator -
  JJC01_RS08575 (JJC01_08565) - 1877883..1880129 (+) 2247 WP_227824047.1 ABC transporter ATP-binding protein -
  JJC01_RS08580 (JJC01_08570) rcrQ 1880122..1881954 (+) 1833 WP_227434881.1 ABC transporter ATP-binding protein Regulator
  JJC01_RS08585 (JJC01_08575) hflX 1882609..1883880 (+) 1272 WP_413927137.1 GTPase HflX -
  JJC01_RS08590 (JJC01_08580) - 1884113..1884652 (+) 540 WP_227434879.1 flavodoxin domain-containing protein -
  JJC01_RS08595 (JJC01_08585) - 1884860..1886320 (+) 1461 WP_227835424.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 67765.40 Da        Isoelectric Point: 5.6128

>NTDB_id=525538 JJC01_RS08580 WP_227434881.1 1880122..1881954(+) (rcrQ) [Clostridioides sp. ES-S-0010-02]
MSRMGKGPMGKSIGAGQKANDFKGTMRKLIAYLSKFKISIILVIVFAIGSASFSIVGPKILGKATTKIFEGLVSKVSGGN
VGIDFDAIGKILALLLCLYLVSALFSFIQGFIMSGISQKVSYNLRQEISVKLDRLPMKYFDTKTHGEILSRITNDIDTLN
QSLNQSMTQLITSVTTMIGVLIMMLSISGIMTLVAILILPISMFVISRIVKKSQKYFRSQQEYLGNVNGQVEETYSGQTI
VKAFNREEEAINEFDKLNDSLYNSAWKSQFLSGIMQPLMMFIGNLGYVMVSILGGWLAIKKTIEVGDIQSFIQYVRNFTQ
PMTQIAQVANLLQSTAAASERVFEFLEEEEEDQVVENAVSIDGLEGKIDFENVNFGYNSNKTIINDFSVNVKPGQKVAIV
GPTGAGKTTIVKLLMRFYDVNSGSILIDGHNIKDFNRSELREMFGMVLQDTWLFSGSIMENIRYGKLNATDEEVIEAAKS
AHVHRFIKTLPDGYNMKLNEEASNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEVLIQKAMDNLMEGRTSFVIA
HRLSTIRDADMILVMNEGDIVEQGNHEELLKKGGFYANLYNSQFEEDEAM

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=525538 JJC01_RS08580 WP_227434881.1 1880122..1881954(+) (rcrQ) [Clostridioides sp. ES-S-0010-02]
ATGAGTAGAATGGGAAAAGGTCCTATGGGAAAATCTATAGGAGCAGGACAAAAAGCAAATGACTTTAAAGGAACCATGCG
AAAACTAATTGCATACTTATCTAAATTTAAAATATCAATAATTTTGGTAATTGTATTTGCTATTGGTAGTGCATCGTTTT
CTATAGTAGGTCCAAAAATTTTAGGTAAGGCGACTACAAAGATATTTGAAGGATTAGTGAGCAAAGTCTCTGGAGGCAAT
GTAGGTATAGATTTTGACGCAATTGGAAAAATTTTAGCCTTATTACTTTGCCTTTACTTGGTAAGTGCACTATTCTCTTT
TATACAAGGATTCATAATGAGTGGAATTTCTCAAAAAGTATCTTATAATTTAAGACAAGAGATTTCAGTAAAATTGGATA
GATTGCCAATGAAGTATTTTGACACTAAAACACATGGTGAAATACTATCAAGAATTACAAATGATATAGATACTCTAAAC
CAAAGTTTAAATCAAAGTATGACACAACTTATAACATCAGTAACAACTATGATAGGTGTTTTGATAATGATGTTATCTAT
AAGTGGTATTATGACATTAGTGGCAATTTTAATATTACCAATATCAATGTTTGTAATTTCAAGAATAGTAAAGAAATCAC
AAAAATACTTTAGATCCCAACAAGAATATTTAGGGAATGTAAATGGTCAAGTTGAGGAAACTTATAGTGGTCAAACAATA
GTAAAAGCATTTAATCGTGAAGAAGAAGCAATTAATGAATTTGATAAATTAAATGATAGTTTGTATAATTCAGCATGGAA
ATCTCAATTTTTATCTGGGATAATGCAACCACTTATGATGTTTATTGGAAACTTAGGATATGTAATGGTATCAATCTTAG
GAGGTTGGCTTGCAATTAAGAAAACAATTGAGGTTGGAGATATACAGTCATTTATACAATATGTAAGAAACTTTACACAA
CCAATGACTCAGATTGCACAGGTTGCTAACTTACTACAGTCAACAGCAGCAGCTTCTGAAAGAGTATTTGAGTTTTTAGA
AGAGGAAGAAGAAGACCAAGTTGTTGAAAATGCAGTTTCAATAGATGGTTTAGAAGGTAAGATTGATTTTGAAAATGTTA
ATTTTGGATATAATTCAAATAAGACTATAATAAATGATTTCTCAGTAAATGTTAAACCTGGTCAAAAAGTTGCTATTGTT
GGACCTACAGGAGCAGGTAAAACTACTATAGTTAAGCTTTTAATGAGATTTTATGATGTTAATAGTGGTTCAATACTAAT
TGATGGTCATAATATTAAAGATTTCAATCGTAGTGAGCTTAGAGAAATGTTTGGTATGGTTCTTCAAGATACATGGTTAT
TTAGTGGCTCAATTATGGAAAATATAAGATATGGTAAACTAAATGCTACAGATGAAGAAGTTATAGAAGCAGCTAAATCT
GCACATGTTCATAGATTTATCAAAACATTGCCAGATGGATACAACATGAAATTAAATGAAGAAGCAAGCAATGTTTCTCA
AGGTCAAAAACAATTATTGACTATAGCTCGTGCCATTTTAGCAGACCCTAAAATCTTAATATTGGATGAAGCTACAAGTT
CTGTTGATACTAGAACAGAAGTATTAATTCAAAAAGCTATGGATAATCTTATGGAAGGTAGAACAAGCTTTGTTATAGCA
CATAGATTATCAACTATACGTGATGCTGACATGATTCTTGTTATGAATGAAGGAGATATAGTTGAACAAGGAAACCATGA
GGAACTTCTAAAGAAAGGTGGATTCTATGCTAATCTTTACAATTCTCAATTTGAAGAAGATGAAGCAATGTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(40-322)

ABC transporter (ABC_tran)

(385-533)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.356

96.721

0.497