Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   T15_RS05900 Genome accession   NC_022665
Coordinates   1180345..1182114 (-) Length   589 a.a.
NCBI ID   WP_023370443.1    Uniprot ID   -
Organism   Streptococcus suis T15     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1175345..1187114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  T15_RS05880 (T15_1153) murB 1175970..1176875 (-) 906 WP_023370438.1 UDP-N-acetylmuramate dehydrogenase -
  T15_RS05885 (T15_1154) thrB 1177110..1177970 (-) 861 WP_011922331.1 homoserine kinase -
  T15_RS05890 (T15_1155) - 1177974..1179260 (-) 1287 WP_023370440.1 homoserine dehydrogenase -
  T15_RS05895 (T15_1156) - 1179365..1180288 (+) 924 WP_024383788.1 polysaccharide deacetylase family protein -
  T15_RS05900 (T15_1157) rcrQ 1180345..1182114 (-) 1770 WP_023370443.1 ABC transporter ATP-binding protein Regulator
  T15_RS05905 (T15_1158) rcrP 1182123..1183859 (-) 1737 WP_023370445.1 ABC transporter ATP-binding protein Regulator
  T15_RS05910 (T15_1159) - 1183935..1184177 (-) 243 WP_012028079.1 KH domain-containing protein -
  T15_RS05915 (T15_1160) rpsP 1184199..1184471 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  T15_RS05920 (T15_1161) - 1184596..1184904 (-) 309 WP_023370447.1 DUF4298 domain-containing protein -
  T15_RS05925 (T15_1162) pcp 1184904..1185551 (-) 648 WP_023370449.1 pyroglutamyl-peptidase I -
  T15_RS05930 (T15_1163) - 1185548..1186303 (-) 756 WP_012775077.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65770.74 Da        Isoelectric Point: 5.5588

>NTDB_id=52537 T15_RS05900 WP_023370443.1 1180345..1182114(-) (rcrQ) [Streptococcus suis T15]
MKNRSVFTRVWDYLHRYKSSVFLAVFLKTISAVMNALEPFVLGLIITELTKNLLDIANGVEGAQINYSYIAIMLAIYTLR
ALLYEIGAYGSNYFMTKAVQGATKELRQDLSHKINKIPVSYFDKHQYGDLLGRFTSDVETVSNALQQSFLQLVNAVLTLS
LAIFMCFWLDVSLALVVVTLVPVTYFGSKFVMGKSQPYFKQQADALGRLNGFVQENLTGFNVLKLYGREEISTEEFRQIT
ADLQEVGFKASFMSGLLMPLVHGFSNIAYVVVALLSGLKVLAGTLTVGNMQAFVQYVWQISQPVQTLTQLAPQLQSAKSS
LERIFSVLDELDEEDANALELTAGLTGQVSFEQVEFGYSEDKPLIRNFNLDVKPGEMVAIVGPTGAGKTTLINLLMRFYD
VTSGAIKVDGQDIRNLSRQSYRSQFGMVLQDAWLYEGTIKENLRFGRLDATDEEIVEAAKAANVDHFIRTLPGGYNMEMN
QESSNISQGQKQLLTIARALLADPAILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHESLLADKGFYYNLYQSQFSESK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=52537 T15_RS05900 WP_023370443.1 1180345..1182114(-) (rcrQ) [Streptococcus suis T15]
ATGAAGAATAGATCAGTATTTACCCGTGTTTGGGACTATTTGCATCGTTACAAATCTTCTGTATTTTTAGCTGTTTTTCT
AAAGACCATCAGTGCAGTTATGAATGCCTTGGAGCCCTTTGTACTGGGGCTTATCATTACAGAATTGACCAAGAATCTGT
TGGATATTGCTAATGGAGTAGAAGGAGCGCAGATTAACTATTCCTACATTGCCATCATGCTTGCCATCTATACCCTTCGC
GCCCTTCTATATGAAATCGGTGCCTACGGTTCCAACTATTTTATGACCAAGGCAGTGCAGGGAGCAACTAAGGAACTACG
TCAGGATTTGAGCCACAAAATTAACAAGATTCCAGTATCTTATTTTGACAAGCACCAGTATGGTGATTTACTCGGACGTT
TTACAAGCGATGTGGAGACTGTTTCAAACGCCCTGCAACAAAGTTTTCTCCAGCTAGTCAATGCCGTTCTGACCCTCTCT
CTAGCCATTTTCATGTGTTTCTGGTTGGATGTATCCCTAGCACTTGTAGTCGTAACCTTGGTTCCAGTGACCTATTTTGG
TTCCAAGTTTGTCATGGGCAAATCCCAGCCATATTTCAAGCAGCAGGCTGATGCCCTGGGGCGTTTGAACGGCTTTGTCC
AAGAAAATCTAACTGGCTTTAACGTTCTCAAACTTTACGGCCGTGAAGAAATTTCTACAGAAGAGTTTCGCCAGATTACC
GCAGATTTGCAGGAAGTTGGTTTCAAGGCTAGTTTCATGTCTGGTTTGCTCATGCCCCTGGTACACGGCTTCTCAAATAT
CGCCTATGTTGTCGTCGCCCTGCTATCTGGATTGAAAGTTCTTGCAGGTACATTGACGGTGGGTAATATGCAGGCCTTCG
TCCAATACGTCTGGCAGATTTCTCAGCCAGTCCAAACCTTGACCCAGTTGGCACCACAGTTACAGTCTGCCAAATCTTCC
CTTGAACGCATCTTTTCAGTCCTAGATGAGCTTGATGAAGAAGACGCCAATGCGCTGGAGTTGACAGCTGGTTTGACCGG
ACAAGTCAGCTTTGAACAGGTCGAATTTGGCTATTCAGAAGACAAGCCGCTTATCCGTAACTTTAATCTTGATGTTAAGC
CAGGTGAAATGGTTGCTATCGTTGGTCCAACAGGGGCAGGTAAGACAACCCTTATCAACTTGCTCATGCGTTTCTATGAT
GTCACATCAGGTGCTATCAAGGTAGATGGGCAGGATATTCGAAATCTTTCACGTCAATCCTACCGTAGTCAATTTGGTAT
GGTCTTGCAGGATGCTTGGCTCTATGAAGGGACCATCAAGGAAAACCTACGTTTTGGACGTCTGGATGCGACGGATGAGG
AAATTGTGGAGGCTGCTAAAGCTGCCAACGTTGACCACTTTATCCGTACCCTGCCTGGCGGTTATAATATGGAAATGAAC
CAGGAATCCAGCAATATTTCCCAAGGTCAGAAACAGCTTTTGACCATTGCACGTGCCTTGTTGGCGGATCCTGCTATTCT
GATTCTTGACGAAGCGACTTCTTCAGTTGATACCCGTTTGGAACTCTTGATTCAAAAGGCCATGAAACGGTTGATGAAAG
GGCGGACAAGTTTCGTCATCGCTCATCGCTTATCTACCATTCAGGAAGCTGATAAGATTTTGGTCTTGAAAGATGGACAG
ATTATCGAACAAGGTAACCATGAAAGTCTTTTGGCAGACAAAGGTTTCTATTATAATCTTTATCAAAGCCAGTTTAGTGA
ATCCAAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(21-304)

ABC transporter (ABC_tran)

(366-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.559

100

0.436

Multiple sequence alignment